BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0677600 Os02g0677600|AK068106
         (256 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62140.1  | chr5:24954563-24955376 REVERSE LENGTH=242          166   1e-41

>AT5G62140.1 | chr5:24954563-24955376 REVERSE LENGTH=242
          Length = 241

 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/191 (48%), Positives = 122/191 (63%), Gaps = 13/191 (6%)

Query: 73  FSVEFRTRDGCRLGISRYPDFAYN--------AQXXXXXXXXASSGEDSGTVLVEFDVSS 124
           +SV F+T    +LGISRYPDF Y+                  AS+ E S    V F+V++
Sbjct: 52  YSVSFKTIGTGKLGISRYPDFEYSPLGGSGAGTAKKIDDKNRASNSELS----VCFNVAT 107

Query: 125 LYIPAMSGATTKXXXXXXXXXXKIDILPEALRGNIDPTSGQVDLKFRSRFCFSVGS-IYR 183
           LYIP+++  TTK          KIDI PE  +G I+  SG+V+L+F ++F F+ G  IYR
Sbjct: 108 LYIPSLTSQTTKFLGFPLPPFLKIDISPEIFQGTINQESGKVELEFMAKFFFTAGGGIYR 167

Query: 184 APPLFVDTTLTSEESSGAIRRGTGERMDGEGRCKLVGVAVVDPIDDVFMNTFLSLPTECI 243
           AP L V T LT+EES G  +RG GER+D EG+C+LVGVA V+ IDD+FMNTFLSLP EC+
Sbjct: 168 APALVVRTVLTTEESIGENKRGKGERLDEEGKCRLVGVAKVETIDDLFMNTFLSLPAECL 227

Query: 244 AYLNATISITE 254
           A L A IS+++
Sbjct: 228 ADLQAIISVSD 238



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,385,219
Number of extensions: 210741
Number of successful extensions: 382
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 160
Effective length of database: 8,474,633
Effective search space: 1355941280
Effective search space used: 1355941280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)