Os02g0672600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to N6-adenosine-methyltransferase 70 kDa subunit (EC 2.1.1.62) (MT-A70) (Methyltransferase-like protein 3). Splice isoform 2.
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Os02g0672600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to N6-adenosine-methyltransferase 70 kDa subunit (EC 2.1.1.62) (MT-A70) (Methyltransferase-like protein 3). Splice isoform 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.55 | 0.295 | 13.2 | 0.981 | 0.679 | -0.376 | 0.115 | 0.107 | 0.232 | 17.5 | 20.5 | 345 | -- | -- |
| 39.58 | 0.293 | 13.2 | 1 | 0.679 | -0.386 | 0.0654 | -- | 0.236 | 17.5 | 20.6 | 354 | -- | -- |
| 39.58 | 0.293 | 13.2 | 0.987 | 0.679 | -0.377 | -- | 0.0737 | 0.234 | 17.5 | 20.6 | 350 | -- | -- |
| 39.6 | 0.293 | 13.2 | 1 | 0.678 | -0.388 | -- | -- | 0.236 | 17.5 | 20.58 | 354 | -- | -- |
| 63.26 | 0.37 | 13.2 | 0.889 | -- | -0.44 | -- | 0.142 | 0.204 | -- | 20.5 | 345 | -- | -- |
| 44.54 | 0.313 | 13.2 | 1.12 | 0.73 | -- | 0.104 | -- | 0.317 | 17.4 | -- | -- | -- | -- |
| 44.56 | 0.313 | 13.2 | 1.12 | 0.731 | -- | -- | -- | 0.317 | 17.4 | -- | -- | -- | -- |
| 62.82 | 0.369 | 13.2 | 0.931 | -- | -0.537 | -- | -- | 0.191 | -- | 20.5 | 345 | -- | -- |
| 46 | 0.316 | 13.3 | -- | 0.735 | -0.91 | -- | -- | -0.0168 | 17.4 | 18.18 | 47520 | -- | -- |
| 72.36 | 0.397 | 13.2 | 1.1 | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
| 77.8 | 0.413 | 13.2 | -- | 0.712 | -- | -- | -- | 0.192 | 17.5 | -- | -- | -- | -- |
| 74.06 | 0.401 | 13.3 | -- | -- | -0.906 | -- | -- | -0.0193 | -- | 17.92 | 46754 | -- | -- |
| 104.18 | 0.476 | 13.2 | -- | -- | -- | -- | -- | 0.178 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.54 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 4 | 37.08 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 5 | 37.18 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 7 | 37.24 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 12 | 37.28 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 28 | 37.49 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 30 | 37.52 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 42 | 37.67 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 51 | 37.73 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 53 | 37.77 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 56 | 37.79 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 7 | 6 |
| 66 | 37.87 | temperature | 10.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 72 | 37.90 | temperature | 30.0 | 90 | < th | dose dependent | sin | 4 | NA |
| 75 | 37.91 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 21 |
| 83 | 37.95 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 111 | 38.08 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 114 | 38.09 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 162 | 38.30 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 206 | 38.43 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 17 |
| 249 | 38.52 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 268 | 38.56 | humidity | 90.0 | 30 | < th | dose independent | rect. | 2 | 6 |
| 287 | 38.59 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 308 | 38.65 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 320 | 38.68 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 5 |
| 352 | 38.74 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 15 |
| 364 | 38.78 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 399 | 38.85 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 401 | 38.85 | temperature | 30.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 412 | 38.86 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 467 | 38.96 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 475 | 38.96 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 8 |
| 487 | 38.97 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 17 |
| 488 | 38.98 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 500 | 39.00 | humidity | 90.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 532 | 39.05 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 539 | 39.05 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 553 | 39.08 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 18 |
| 617 | 39.16 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 631 | 39.18 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 668 | 39.22 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 696 | 39.24 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 704 | 39.25 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 8 | 6 |
| 740 | 39.29 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 748 | 39.30 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 762 | 39.32 | radiation | 10.0 | 270 | > th | dose independent | sin | 7 | NA |
| 763 | 39.32 | temperature | 25.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 803 | 39.36 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 820 | 39.37 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 14 | 18 |
| 833 | 39.38 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 16 | 16 |
| 843 | 39.39 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 848 | 39.40 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 861 | 39.41 | wind | 5.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 881 | 39.43 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 5 |
| 904 | 39.45 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 907 | 39.45 | humidity | 90.0 | 720 | < th | dose independent | rect. | 19 | 7 |
| 991 | 39.53 | humidity | 80.0 | 270 | < th | dose independent | rect. | 8 | 2 |
| 996 | 39.53 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 5 | 2 |