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Os02g0667000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Complex 1 LYR protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.02 (0.0312) R2 : 0.574
β1 : 2.26 (0.116) R2dD : 0.383 R2D : 0.197
β2 : 0.959 (0.0772) R2dC : 0.158 R2C : 0.0633
β3 : -1.04 (0.124) R2dE : 0.0755 R2E : -0.063
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.809 (0.0667) R2dN8 : 0.186 R2N8 : 0.0825
σ : 0.581
deviance : 155.81
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C
peak time of C : 23.2
E
wheather : humidity
threshold : 77
memory length : 1196
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
155.25 0.585 7.02 2.28 0.961 -1.05 0.357 0.0528 0.808 23.1 76.63 1196 -- --
155.25 0.58 7.02 2.28 0.962 -1.05 0.36 -- 0.807 23.1 76.79 1196 -- --
155.75 0.581 7.02 2.28 0.96 -1.06 -- 0.231 0.812 23.2 76.92 1196 -- --
155.81 0.581 7.02 2.26 0.959 -1.04 -- -- 0.809 23.2 77 1196 -- --
196.82 0.653 6.99 2.25 -- -0.858 -- 0.352 0.839 -- 82.24 1579 -- --
179.33 0.628 7.01 2.09 0.782 -- 0.233 -- 0.865 22.8 -- -- -- --
179.55 0.627 7.01 2.08 0.781 -- -- -- 0.864 22.8 -- -- -- --
196.81 0.653 7 2.22 -- -0.853 -- -- 0.835 -- 82.05 1580 -- --
281.47 0.781 7.05 -- 0.909 -0.867 -- -- 0.701 23.2 94 2649 -- --
217.28 0.689 6.99 2.09 -- -- -- -- 0.869 -- -- -- -- --
293.05 0.801 7.06 -- 0.798 -- -- -- 0.633 23 -- -- -- --
238.77 0.72 7.04 -- -- -2.14 -- -- 0.579 -- 67 30434 -- --
332.65 0.851 7.04 -- -- -- -- -- 0.637 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 151.83 temperature 25 720 > th dose dependent rect. 15 8
6 152.51 temperature 25 720 > th dose dependent rect. 17 5
12 152.96 wind 9 43200 > th dose dependent rect. 12 18
13 152.97 wind 9 43200 > th dose dependent rect. 13 5
18 153.04 wind 9 43200 > th dose independent rect. 13 17
19 153.04 wind 9 43200 < th dose independent rect. 13 17
26 153.11 wind 9 43200 > th dose dependent rect. 12 11
29 153.13 humidity 50 4320 > th dose independent rect. 14 3
33 153.15 wind 7 43200 > th dose dependent rect. 10 8
41 153.18 wind 7 43200 > th dose dependent rect. 10 10
47 153.20 wind 9 43200 > th dose dependent rect. 12 13
51 153.22 wind 7 43200 > th dose dependent rect. 10 6
54 153.23 wind 7 43200 > th dose independent rect. 1 17
64 153.26 wind 9 43200 > th dose independent rect. 13 12
77 153.29 wind 9 43200 > th dose independent rect. 13 10
86 153.32 wind 9 43200 < th dose independent rect. 13 10
94 153.34 wind 7 43200 > th dose dependent rect. 12 2
100 153.34 wind 7 43200 > th dose dependent rect. 3 15
108 153.37 wind 7 43200 > th dose dependent sin 23 NA
121 153.39 wind 7 43200 < th dose independent rect. 1 17
168 153.44 wind 9 43200 > th dose independent rect. 17 23
170 153.45 wind 7 43200 < th dose independent rect. 1 19
268 153.59 wind 9 43200 > th dose independent rect. 19 21
294 153.64 wind 7 43200 > th dose independent rect. 9 9
295 153.64 wind 9 43200 > th dose independent rect. 10 11
304 153.65 wind 7 43200 > th dose independent rect. 7 11
318 153.67 wind 7 43200 > th dose independent sin 0 NA
342 153.69 wind 1 43200 < th dose dependent rect. 8 2
344 153.70 wind 9 43200 < th dose independent rect. 13 5
350 153.70 wind 7 43200 > th dose dependent rect. 19 23
375 153.75 wind 9 43200 < th dose independent rect. 10 11
382 153.75 temperature 25 720 > th dose dependent sin 14 NA
389 153.76 humidity 50 4320 > th dose independent sin 13 NA
391 153.76 humidity 50 4320 > th dose independent rect. 14 17
399 153.76 wind 9 43200 < th dose independent rect. 17 23
400 153.76 wind 7 43200 > th dose dependent no NA NA
408 153.77 humidity 50 4320 > th dose independent rect. 14 11
415 153.78 humidity 50 4320 > th dose independent rect. 14 13
420 153.79 wind 9 43200 < th dose independent rect. 10 4
423 153.79 humidity 50 4320 > th dose independent rect. 14 7
426 153.79 humidity 50 4320 > th dose independent rect. 14 15
448 153.81 wind 9 43200 > th dose independent sin 19 NA
473 153.83 wind 7 43200 < th dose independent sin 0 NA
508 153.86 wind 9 43200 < th dose independent sin 20 NA
510 153.86 wind 9 43200 > th dose independent rect. 13 5
513 153.86 wind 7 43200 < th dose independent rect. 7 11
539 153.88 wind 7 43200 < th dose independent rect. 9 9
578 153.90 wind 3 43200 > th dose dependent rect. 1 17
595 153.92 wind 9 43200 > th dose independent rect. 10 4
637 153.95 humidity 60 4320 < th dose dependent rect. 16 1
642 153.95 wind 7 43200 > th dose dependent rect. 15 23
718 154.02 wind 9 43200 < th dose independent rect. 12 2
746 154.03 humidity 60 4320 < th dose dependent rect. 15 4
785 154.06 wind 9 43200 > th dose independent no NA NA
818 154.08 wind 9 43200 > th dose independent rect. 20 18
831 154.09 humidity 80 43200 > th dose independent rect. 22 1
876 154.13 wind 9 43200 < th dose independent no NA NA
911 154.16 wind 9 43200 > th dose independent rect. 15 23
954 154.20 wind 7 43200 > th dose dependent rect. 15 1
990 154.24 wind 9 43200 < th dose independent rect. 15 23