BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0667000 Os02g0667000|AK058849
         (82 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76065.1  | chr1:28544899-28545306 REVERSE LENGTH=81           122   3e-29

>AT1G76065.1 | chr1:28544899-28545306 REVERSE LENGTH=81
          Length = 80

 Score =  122 bits (307), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 70/77 (90%)

Query: 5  MDLRAFILRARVLKLYRQALRMTRRAPVHARDELRQTVRAEIEKNRRCDDKQKIKFLISE 64
          +DL++FILRARVLKLYRQAL++  RAPVH R EL+QTVR E+EKNR C+DKQKI++LISE
Sbjct: 4  LDLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYLISE 63

Query: 65 GLQRLKGLDEMLDMTGN 81
          GL+R+KGLDEMLDM G+
Sbjct: 64 GLERIKGLDEMLDMQGH 80



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.139    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,458,735
Number of extensions: 43762
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 1
Length of query: 82
Length of database: 11,106,569
Length adjustment: 53
Effective length of query: 29
Effective length of database: 9,653,521
Effective search space: 279952109
Effective search space used: 279952109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 105 (45.1 bits)