Os02g0666600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os02g0666600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.28 | 0.359 | 2.82 | -0.0867 | 0.0481 | -5.54 | 0.136 | -25.4 | 0.0993 | 10.1 | 9.909 | 10 | -- | -- |
| 59.01 | 0.358 | 2.84 | -0.00705 | 0.0764 | 3.05 | 0.256 | -- | 0.0805 | 16.2 | 10.88 | 6 | -- | -- |
| 58.31 | 0.356 | 2.82 | -0.0842 | 0.0569 | -5.47 | -- | -25.2 | 0.0991 | 8.14 | 9.886 | 9 | -- | -- |
| 58.46 | 0.356 | 2.85 | 0.012 | 0.0239 | 3.13 | -- | -- | 0.0991 | 4.16 | 10.9 | 12 | -- | -- |
| 58.49 | 0.356 | 2.82 | -0.0841 | -- | -5.53 | -- | -25.3 | 0.0994 | -- | 9.891 | 9 | -- | -- |
| 67.88 | 0.386 | 2.85 | -0.0375 | 0.0469 | -- | 0.145 | -- | 0.0859 | 10.1 | -- | -- | -- | -- |
| 67.96 | 0.386 | 2.85 | -0.0318 | 0.0462 | -- | -- | -- | 0.0863 | 10.1 | -- | -- | -- | -- |
| 58.49 | 0.356 | 2.85 | 0.0108 | -- | 3.11 | -- | -- | 0.0996 | -- | 10.88 | 19 | -- | -- |
| 58.32 | 0.356 | 2.84 | -- | 0.0572 | 3.11 | -- | -- | 0.0979 | 8.06 | 10.32 | 6 | -- | -- |
| 68.09 | 0.386 | 2.85 | -0.0324 | -- | -- | -- | -- | 0.0862 | -- | -- | -- | -- | -- |
| 67.99 | 0.386 | 2.85 | -- | 0.0463 | -- | -- | -- | 0.0898 | 10.2 | -- | -- | -- | -- |
| 58.49 | 0.356 | 2.85 | -- | -- | 3.11 | -- | -- | 0.0985 | -- | 10.24 | 7 | -- | -- |
| 68.12 | 0.385 | 2.85 | -- | -- | -- | -- | -- | 0.0898 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.32 | wind | 9 | 10 | > th | dose independent | rect. | 15 | 1 |
| 9 | 58.32 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 49 | 59.54 | wind | 9 | 30 | > th | dose dependent | rect. | 15 | 11 |
| 191 | 61.02 | wind | 9 | 30 | > th | dose dependent | sin | 14 | NA |
| 274 | 62.01 | radiation | 1 | 90 | < th | dose independent | rect. | 8 | 1 |
| 277 | 62.01 | radiation | 1 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 319 | 63.46 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 9 |
| 330 | 63.48 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 5 |
| 354 | 63.58 | wind | 9 | 30 | > th | dose independent | sin | 14 | NA |
| 356 | 63.58 | temperature | 20 | 90 | < th | dose dependent | rect. | 7 | 4 |
| 359 | 63.61 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 2 |
| 367 | 63.61 | temperature | 20 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 400 | 63.65 | wind | 5 | 10 | > th | dose independent | rect. | 8 | 1 |
| 410 | 63.65 | wind | 5 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 549 | 64.40 | humidity | 80 | 270 | < th | dose dependent | rect. | 4 | 4 |
| 574 | 64.46 | wind | 9 | 30 | < th | dose independent | sin | 14 | NA |
| 622 | 64.61 | wind | 9 | 30 | < th | dose independent | rect. | 21 | 23 |
| 630 | 64.63 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 639 | 64.68 | humidity | 80 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 704 | 64.75 | humidity | 50 | 30 | > th | dose independent | rect. | 21 | 23 |
| 705 | 64.75 | wind | 3 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 717 | 64.82 | humidity | 50 | 720 | > th | dose independent | rect. | 3 | 8 |
| 726 | 64.87 | radiation | 1 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 732 | 64.88 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 15 | 1 |
| 842 | 64.93 | wind | 9 | 30 | > th | dose dependent | no | NA | NA |
| 893 | 64.95 | humidity | 70 | 10 | < th | dose independent | rect. | 15 | 1 |
| 896 | 64.96 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 1 |
| 914 | 65.00 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 936 | 65.07 | wind | 3 | 30 | > th | dose independent | rect. | 20 | 1 |
| 937 | 65.07 | wind | 5 | 30 | < th | dose independent | rect. | 20 | 1 |
| 939 | 65.07 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 1 |
| 941 | 65.07 | temperature | 10 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 944 | 65.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 948 | 65.07 | humidity | 50 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 954 | 65.07 | humidity | 90 | 30 | < th | dose independent | rect. | 20 | 1 |
| 955 | 65.07 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 957 | 65.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 977 | 65.07 | temperature | 10 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 980 | 65.07 | temperature | 10 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 993 | 65.08 | temperature | 10 | 30 | > th | dose independent | rect. | 20 | 1 |
| 995 | 65.08 | temperature | 30 | 30 | < th | dose independent | rect. | 20 | 1 |
| 996 | 65.08 | humidity | 50 | 30 | > th | dose independent | rect. | 20 | 1 |