BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0666600 Os02g0666600|AK107463
(197 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G22870.1 | chr5:7647056-7647679 REVERSE LENGTH=208 80 6e-16
AT2G27080.1 | chr2:11566383-11567165 FORWARD LENGTH=261 58 3e-09
AT1G08160.1 | chr1:2559672-2560337 REVERSE LENGTH=222 57 9e-09
AT5G21130.1 | chr5:7185968-7186813 FORWARD LENGTH=282 54 5e-08
AT1G61760.1 | chr1:22807440-22808114 REVERSE LENGTH=225 49 2e-06
>AT5G22870.1 | chr5:7647056-7647679 REVERSE LENGTH=208
Length = 207
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 37 WLTVRPAKPLLVYVDHAAVTGFNFTSGGSLNGTFDITLRAYNQNKRAAVWYKSVEVGVWY 96
WL +P K L V++A+V FN T+ ++ TF T++++N N R +V+Y SVE+ V +
Sbjct: 48 WLETKPKK-LRYTVENASVQNFNLTNDNHMSATFQFTIQSHNPNHRISVYYSSVEIFVKF 106
Query: 97 GGTYLAGAVAPGFDLPPLNVKRIDXXXXXXXXXXXXGVEATVKKDRSDGKLPVDVHIKGK 156
LA F P +NVK+ID ++ S GK+ +V +K +
Sbjct: 107 KDQTLAFDTVEPFHQPRMNVKQIDETLIAENVAVSKSNGKDLRSQNSLGKIGFEVFVKAR 166
Query: 157 VRFRYGLVRTRRYKLRASC 175
VRF+ G+ ++ + C
Sbjct: 167 VRFKVGIWKSSHRTAKIKC 185
>AT2G27080.1 | chr2:11566383-11567165 FORWARD LENGTH=261
Length = 260
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 2/140 (1%)
Query: 37 WLTVRPAKPLLVYVDHAAVTGFNFTSGGSLNGTFDITLRAYNQNKRAAVWY-KSVEVGVW 95
+L RP P ++ +V+G N S ++ +F++T+R+ N N + V+Y K V V+
Sbjct: 97 YLIYRPEAPKY-SIEGFSVSGINLNSTSPISPSFNVTVRSRNGNGKIGVYYEKESSVDVY 155
Query: 96 YGGTYLAGAVAPGFDLPPLNVKRIDXXXXXXXXXXXXGVEATVKKDRSDGKLPVDVHIKG 155
Y ++ V P F P NV + G+ ++ + S +P + IK
Sbjct: 156 YNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVPFKLKIKA 215
Query: 156 KVRFRYGLVRTRRYKLRASC 175
V+ ++G V+T + C
Sbjct: 216 PVKIKFGSVKTWTMIVNVDC 235
>AT1G08160.1 | chr1:2559672-2560337 REVERSE LENGTH=222
Length = 221
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Query: 37 WLTVRPAKPLLVYVDHAAVTGFNF-TSGGSLNGTFDITLRAYNQNKRAAVWYKSVEVGVW 95
+LT+RP K L+ V+ A+V F + +N F +++YN K +V Y S+ +
Sbjct: 59 YLTLRP-KRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEKHVSVRYHSMRISTA 117
Query: 96 YGGTYLAGAVAPGFDLPPLNVKRIDXXXXXXXXXXXXGVEATVKKDRSDGKLPVDVHIKG 155
+ +A F P N RI+ ++ ++S G + ++V+I
Sbjct: 118 HHNQSVAHKNISPFKQRPKNETRIETQLVSHNVALSKFNARDLRAEKSKGTIEMEVYITA 177
Query: 156 KVRFRYGLVRTRRYKLRASC 175
+V ++ + R+RR L+A C
Sbjct: 178 RVSYKTWIFRSRRRTLKAVC 197
>AT5G21130.1 | chr5:7185968-7186813 FORWARD LENGTH=282
Length = 281
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 58/159 (36%), Gaps = 2/159 (1%)
Query: 37 WLTVRPAKPLLVYVDHAAVTGFNFTSGGSLNGTFDITLRAYN-QNKRAAVWYKSVEVGVW 95
+L +P KP V +VTG N TS + I LR+ N + K ++ K E V+
Sbjct: 118 YLVYQPHKPQF-SVSGVSVTGINLTSSSPFSPVIRIKLRSQNVKGKLGLIYEKGNEADVF 176
Query: 96 YGGTYLAGAVAPGFDLPPLNVKRIDXXXXXXXXXXXXGVEATVKKDRSDGKLPVDVHIKG 155
+ GT L F P NV I + + + GK+P + IK
Sbjct: 177 FNGTKLGNGEFTAFKQPAGNVTVIVTVLKGSSVKLKSSSRKELTESQKKGKVPFGLRIKA 236
Query: 156 KVRFRYGLVRTRRYKLRASCXXXXXXXXXXXXXXRVNCH 194
V+F+ G V T + C NC
Sbjct: 237 PVKFKVGSVTTWTMTITVDCKITVDKLTASATVKTENCE 275
>AT1G61760.1 | chr1:22807440-22808114 REVERSE LENGTH=225
Length = 224
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 37 WLTVRPAKPLLVYVDHAAVTGFNFTSGGSLNG-TFDITLRAYNQNKRAAVWYKSVEVGVW 95
W++++P +P V++ +++G + G + +F IT A+N N+ ++Y S+E V+
Sbjct: 63 WISLQPHRPR-VHIRGFSISGLSRPDGFETSHISFKIT--AHNPNQNVGIYYDSMEGSVY 119
Query: 96 YGGTYLAGA-VAPGFDLPPLNVKRIDXXXXXXXXXXXXGVEATVKKDRSDGKLPVDVHIK 154
Y + + F P N ID +++DR+ GK+ + ++
Sbjct: 120 YKEKRIGSTKLTNPFYQDPKNTSSIDGALSRPAMAVNKDRWMEMERDRNQGKIMFRLKVR 179
Query: 155 GKVRFRYGLVRTRRYKLRASC 175
+RF+ ++ +K+ ASC
Sbjct: 180 SMIRFKVYTWHSKSHKMYASC 200
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,092,424
Number of extensions: 104448
Number of successful extensions: 194
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 8
Length of query: 197
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 104
Effective length of database: 8,556,881
Effective search space: 889915624
Effective search space used: 889915624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)