Os02g0663300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Beige/BEACH domain containing protein.
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Os02g0663300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Beige/BEACH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.93 | 0.589 | 8.38 | -0.838 | 1.26 | 2.18 | -0.014 | -0.254 | -0.68 | 3.33 | 19.3 | 3489 | -- | -- |
| 157.01 | 0.584 | 8.39 | -0.855 | 1.27 | 2.24 | 0.0161 | -- | -0.687 | 3.33 | 19.3 | 3489 | -- | -- |
| 156.93 | 0.583 | 8.38 | -0.837 | 1.26 | 2.18 | -- | -0.254 | -0.68 | 3.33 | 19.31 | 3489 | -- | -- |
| 157.01 | 0.584 | 8.39 | -0.867 | 1.26 | 2.24 | -- | -- | -0.686 | 3.32 | 19.32 | 3489 | -- | -- |
| 245.04 | 0.729 | 8.38 | -0.745 | -- | 2.25 | -- | 0.178 | -0.655 | -- | 19.19 | 4721 | -- | -- |
| 232.58 | 0.715 | 8.5 | -2.06 | 1.23 | -- | 0.0801 | -- | -1.18 | 3.49 | -- | -- | -- | -- |
| 232.6 | 0.714 | 8.5 | -2.06 | 1.23 | -- | -- | -- | -1.18 | 3.48 | -- | -- | -- | -- |
| 244.74 | 0.729 | 8.38 | -0.671 | -- | 2.25 | -- | -- | -0.628 | -- | 19.07 | 4704 | -- | -- |
| 165.4 | 0.599 | 8.35 | -- | 1.23 | 2.75 | -- | -- | -0.509 | 3.44 | 18.8 | 6330 | -- | -- |
| 317.42 | 0.832 | 8.5 | -2.01 | -- | -- | -- | -- | -1.15 | -- | -- | -- | -- | -- |
| 344.5 | 0.868 | 8.45 | -- | 1.19 | -- | -- | -- | -0.955 | 3.49 | -- | -- | -- | -- |
| 250.56 | 0.737 | 8.35 | -- | -- | 2.76 | -- | -- | -0.498 | -- | 18.7 | 6177 | -- | -- |
| 423.84 | 0.961 | 8.45 | -- | -- | -- | -- | -- | -0.929 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.23 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 4 | 148.71 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 5 | 149.06 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 6 | 149.13 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 7 | 149.18 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 12 | 149.37 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 15 | 149.55 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 21 | 149.88 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 27 | 150.33 | wind | 9 | 43200 | > th | dose independent | sin | 23 | NA |
| 29 | 150.47 | wind | 9 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 31 | 150.52 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 37 | 150.83 | wind | 9 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 41 | 150.88 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 54 | 151.18 | wind | 9 | 43200 | < th | dose independent | sin | 23 | NA |
| 73 | 151.62 | wind | 3 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 82 | 151.82 | wind | 9 | 43200 | > th | dose independent | rect. | 21 | 20 |
| 87 | 151.91 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 93 | 152.01 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 22 |
| 101 | 152.14 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 123 | 152.37 | wind | 9 | 43200 | < th | dose independent | rect. | 21 | 20 |
| 125 | 152.40 | radiation | 30 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 130 | 152.47 | wind | 9 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 143 | 152.60 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 144 | 152.61 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 166 | 152.90 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 169 | 152.93 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 189 | 153.29 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 22 |
| 195 | 153.38 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 203 | 153.51 | wind | 9 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 210 | 153.58 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 217 | 153.64 | wind | 9 | 14400 | < th | dose dependent | rect. | 3 | 11 |
| 223 | 153.72 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 237 | 153.86 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 242 | 153.91 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 253 | 154.03 | wind | 9 | 14400 | < th | dose dependent | rect. | 1 | 13 |
| 257 | 154.08 | wind | 1 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 260 | 154.09 | wind | 1 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 267 | 154.15 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 310 | 154.39 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 17 |
| 321 | 154.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 21 |
| 331 | 154.49 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 17 |
| 345 | 154.55 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 13 |
| 350 | 154.58 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 11 |
| 352 | 154.60 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 359 | 154.63 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 17 |
| 364 | 154.67 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 366 | 154.68 | wind | 3 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 367 | 154.68 | wind | 1 | 43200 | > th | dose dependent | rect. | 22 | 5 |
| 456 | 155.11 | wind | 9 | 43200 | > th | dose independent | no | NA | NA |
| 461 | 155.14 | wind | 9 | 14400 | < th | dose dependent | sin | 5 | NA |
| 468 | 155.16 | wind | 7 | 43200 | > th | dose dependent | rect. | 4 | 13 |
| 482 | 155.24 | radiation | 30 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 490 | 155.25 | radiation | 30 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 512 | 155.32 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 556 | 155.47 | wind | 7 | 43200 | > th | dose dependent | sin | 23 | NA |
| 570 | 155.51 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 615 | 155.63 | wind | 9 | 43200 | < th | dose independent | no | NA | NA |
| 624 | 155.67 | wind | 1 | 14400 | > th | dose dependent | sin | 5 | NA |
| 626 | 155.68 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 630 | 155.69 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 661 | 155.85 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 665 | 155.87 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 693 | 155.99 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 728 | 156.13 | wind | 7 | 43200 | > th | dose dependent | rect. | 21 | 21 |
| 756 | 156.23 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 765 | 156.26 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 787 | 156.34 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 878 | 156.66 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 883 | 156.70 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 894 | 156.76 | radiation | 30 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 901 | 156.79 | radiation | 30 | 43200 | < th | dose independent | sin | 7 | NA |
| 903 | 156.79 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 996 | 157.12 | wind | 3 | 43200 | < th | dose independent | sin | 3 | NA |