BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0663300 Os02g0663300|J023111K16
(60 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45540.2 | chr2:18757881-18772229 REVERSE LENGTH=3002 81 1e-16
AT1G03060.1 | chr1:712971-726891 REVERSE LENGTH=3602 67 3e-12
AT4G02660.1 | chr4:1159927-1173791 REVERSE LENGTH=3528 64 2e-11
AT1G58230.1 | chr1:21566331-21578865 FORWARD LENGTH=2605 63 2e-11
AT5G18525.1 | chr5:6146932-6153658 REVERSE LENGTH=1640 53 3e-08
>AT2G45540.2 | chr2:18757881-18772229 REVERSE LENGTH=3002
Length = 3001
Score = 81.3 bits (199), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/41 (78%), Positives = 39/41 (95%)
Query: 8 SVQLPPWAENPVDFICKHRKALESDYVSAHLHEWIDLIFGY 48
+V+LPPWA+NPVDF+ K R+ALES++VSAHLHEWIDLIFGY
Sbjct: 2465 AVKLPPWAKNPVDFVHKQRRALESEHVSAHLHEWIDLIFGY 2505
>AT1G03060.1 | chr1:712971-726891 REVERSE LENGTH=3602
Length = 3601
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/41 (73%), Positives = 33/41 (80%), Gaps = 1/41 (2%)
Query: 9 VQLPPWAENPV-DFICKHRKALESDYVSAHLHEWIDLIFGY 48
V LPPWA V +FI KHR+ALESDYVS +LH WIDLIFGY
Sbjct: 3145 VFLPPWARGSVREFILKHREALESDYVSENLHHWIDLIFGY 3185
>AT4G02660.1 | chr4:1159927-1173791 REVERSE LENGTH=3528
Length = 3527
Score = 63.5 bits (153), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/41 (70%), Positives = 33/41 (80%), Gaps = 1/41 (2%)
Query: 9 VQLPPWAENPV-DFICKHRKALESDYVSAHLHEWIDLIFGY 48
V LPPWA V +FI KHR+ALESDYVS +LH WIDLIFG+
Sbjct: 3089 VILPPWARGSVREFIRKHREALESDYVSENLHHWIDLIFGH 3129
>AT1G58230.1 | chr1:21566331-21578865 FORWARD LENGTH=2605
Length = 2604
Score = 63.2 bits (152), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/43 (62%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 7 ASVQLPPWAE-NPVDFICKHRKALESDYVSAHLHEWIDLIFGY 48
V LPPWA+ +P FI ++R+ALES+YVS+HLH+WIDLIFG+
Sbjct: 2125 GEVCLPPWAKGSPEMFIARNREALESEYVSSHLHDWIDLIFGH 2167
>AT5G18525.1 | chr5:6146932-6153658 REVERSE LENGTH=1640
Length = 1639
Score = 52.8 bits (125), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 7 ASVQLPPWAENPVDFICKHRKALESDYVSAHLHEWIDLIFGYVI 50
+ + +PPWA +P +FI HR ALES +VS+ +H WID+ FGY +
Sbjct: 500 SDLAVPPWASSPDEFIRLHRDALESPHVSSLIHHWIDITFGYKM 543
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.140 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,367,294
Number of extensions: 39478
Number of successful extensions: 128
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 5
Length of query: 60
Length of database: 11,106,569
Length adjustment: 33
Effective length of query: 27
Effective length of database: 10,201,841
Effective search space: 275449707
Effective search space used: 275449707
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)