Os02g0654400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription initiation factor TFIID component TAF4 domain containing protein.
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Os02g0654400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription initiation factor TFIID component TAF4 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.97 | 0.261 | 10.4 | 1.14 | 0.0635 | -1.39 | 0.0292 | -0.61 | 0.391 | 10.5 | 10.01 | 95 | -- | -- |
| 30.93 | 0.259 | 10.4 | 1.23 | 0.0171 | -1.38 | -0.353 | -- | 0.412 | 16 | 6.686 | 139 | -- | -- |
| 30.96 | 0.259 | 10.4 | 1.14 | 0.054 | -1.41 | -- | -0.628 | 0.389 | 11.1 | 10.23 | 108 | -- | -- |
| 31.23 | 0.26 | 10.4 | 1.22 | 0.0513 | -1.41 | -- | -- | 0.413 | 10.7 | 9.664 | 108 | -- | -- |
| 31.02 | 0.259 | 10.4 | 1.13 | -- | -1.37 | -- | -0.598 | 0.384 | -- | 8.495 | 139 | -- | -- |
| 49.76 | 0.331 | 10.4 | 0.944 | 0.377 | -- | 0.589 | -- | 0.221 | 3.84 | -- | -- | -- | -- |
| 50.78 | 0.334 | 10.4 | 0.935 | 0.38 | -- | -- | -- | 0.217 | 3.76 | -- | -- | -- | -- |
| 31.3 | 0.261 | 10.4 | 1.22 | -- | -1.38 | -- | -- | 0.408 | -- | 5.436 | 139 | -- | -- |
| 65.41 | 0.379 | 10.5 | -- | 0.145 | -0.745 | -- | -- | 0.152 | 5.47 | 25.23 | 9 | -- | -- |
| 58.76 | 0.358 | 10.4 | 0.951 | -- | -- | -- | -- | 0.227 | -- | -- | -- | -- | -- |
| 73.84 | 0.402 | 10.5 | -- | 0.399 | -- | -- | -- | 0.113 | 3.74 | -- | -- | -- | -- |
| 64.98 | 0.375 | 10.4 | -- | -- | -0.808 | -- | -- | 0.195 | -- | 24 | 110 | -- | -- |
| 82.63 | 0.424 | 10.5 | -- | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.95 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 2 | 30.96 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 3 | 30.99 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 6 | 31.11 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 31 | 31.93 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 35 | 32.04 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 63 | 32.28 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 67 | 32.35 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 74 | 32.44 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 83 | 32.52 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 93 | 32.68 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 96 | 32.68 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 100 | 32.74 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 103 | 32.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 104 | 32.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 112 | 32.80 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 122 | 32.89 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 136 | 33.00 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 22 | 20 |
| 139 | 33.01 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 149 | 33.04 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 152 | 33.05 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 158 | 33.07 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 183 | 33.15 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 206 | 33.19 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 210 | 33.21 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 16 |
| 212 | 33.21 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 246 | 33.29 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 265 | 33.33 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 266 | 33.34 | temperature | 25.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 294 | 33.41 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 355 | 33.54 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 374 | 33.57 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 421 | 33.64 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 436 | 33.68 | temperature | 10.0 | 720 | > th | dose dependent | sin | 0 | NA |
| 454 | 33.70 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 468 | 33.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 485 | 33.75 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 492 | 33.75 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 509 | 33.80 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 6 |
| 521 | 33.83 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 525 | 33.83 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 550 | 33.88 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 559 | 33.89 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 617 | 33.96 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 622 | 33.96 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 6 | 15 |
| 632 | 33.97 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 633 | 33.97 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 637 | 33.97 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 656 | 33.99 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 688 | 34.03 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 711 | 34.04 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 723 | 34.06 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 742 | 34.08 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 23 |
| 782 | 34.11 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 860 | 34.15 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 8 | 10 |
| 972 | 34.21 | temperature | 30.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 973 | 34.21 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 23 |
| 975 | 34.21 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 6 |