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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0652800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Major facilitator superfamily MFS_1 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.48 (0.0403) R2 : 0.362
β1 : 1.72 (0.144) R2dD : 0.188 R2D : 0.202
β2 : 0.86 (0.105) R2dC : 0.11 R2C : 0.0561
β3 : -1.02 (0.142) R2dE : 0.0991 R2E : -0.0479
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.56 (0.094) R2dN8 : 0.0709 R2N8 : 0.0278
σ : 0.734
deviance : 248.57
__
_____
C
peak time of C : 5.02
E
wheather : radiation
threshold : 8.1
memory length : 14959
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
242.74 0.732 4.35 2.52 0.665 -1.21 0.958 -5.03 -0.18 5.66 1.563 4287 -- --
250.5 0.737 4.52 1.78 0.752 -1.06 1.02 -- -0.584 5.1 8.069 8708 -- --
244.95 0.729 4.35 2.51 0.668 -1.18 -- -4.91 -0.193 5.57 1.662 4291 -- --
248.57 0.734 4.48 1.72 0.86 -1.02 -- -- -0.56 5.02 8.1 14959 -- --
268.07 0.763 4.36 2.56 -- -1.2 -- -5.01 -0.178 -- 1.758 4297 -- --
274.36 0.777 4.43 1.64 0.704 -- 1.04 -- -0.236 5.04 -- -- -- --
277.12 0.78 4.43 1.64 0.711 -- -- -- -0.241 5.09 -- -- -- --
275 0.772 4.52 1.72 -- -0.931 -- -- -0.584 -- 11.58 18704 -- --
305.3 0.814 4.48 -- 0.891 -0.872 -- -- -0.557 4.99 4.019 16081 -- --
303.63 0.814 4.44 1.66 -- -- -- -- -0.223 -- -- -- -- --
347.71 0.872 4.48 -- 0.74 -- -- -- -0.423 5.01 -- -- -- --
286.79 0.789 4.6 -- -- -1.49 -- -- -0.9 -- 1.39 47520 -- --
376.49 0.906 4.48 -- -- -- -- -- -0.408 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 235.30 wind 3.0 43200 > th dose dependent rect. 23 11
17 235.97 wind 5.0 43200 < th dose independent sin 8 NA
21 236.03 wind 5.0 43200 > th dose dependent rect. 2 11
28 236.12 wind 5.0 43200 < th dose independent rect. 19 17
29 236.12 wind 3.0 43200 > th dose dependent sin 8 NA
40 236.22 wind 5.0 43200 > th dose independent sin 8 NA
42 236.25 wind 5.0 43200 > th dose independent rect. 19 17
44 236.26 wind 5.0 43200 < th dose independent rect. 19 14
51 236.30 wind 5.0 43200 < th dose independent rect. 23 14
63 236.37 precipitation 0.1 43200 < th dose independent rect. 7 2
67 236.37 precipitation 0.1 43200 < th dose dependent rect. 7 2
83 236.47 wind 5.0 43200 > th dose independent rect. 23 14
90 236.51 precipitation 0.1 43200 < th dose independent rect. 6 4
91 236.51 precipitation 0.1 43200 < th dose dependent rect. 6 4
113 236.67 wind 5.0 43200 > th dose independent rect. 19 13
118 236.70 wind 5.0 43200 < th dose independent rect. 2 10
120 236.71 precipitation 0.1 43200 < th dose independent rect. 5 6
122 236.71 precipitation 0.1 43200 < th dose dependent rect. 5 6
127 236.75 precipitation 0.1 43200 > th dose independent rect. 6 4
129 236.75 precipitation 0.1 43200 > th dose dependent rect. 6 4
161 237.00 wind 9.0 43200 < th dose dependent rect. 2 2
165 237.03 precipitation 0.1 43200 > th dose dependent rect. 5 6
170 237.07 precipitation 0.1 43200 > th dose independent rect. 5 6
209 237.22 wind 1.0 43200 > th dose dependent rect. 2 2
227 237.32 precipitation 0.1 43200 < th dose independent rect. 4 18
228 237.32 precipitation 0.1 43200 < th dose dependent rect. 4 18
233 237.34 precipitation 0.1 43200 > th dose independent rect. 4 18
319 237.76 precipitation 0.1 43200 > th dose independent rect. 4 14
325 237.78 precipitation 0.1 43200 < th dose independent rect. 5 13
326 237.78 precipitation 0.1 43200 < th dose dependent rect. 5 13
332 237.81 precipitation 0.1 43200 < th dose independent rect. 5 9
333 237.81 precipitation 0.1 43200 < th dose dependent rect. 5 9
362 237.93 precipitation 0.1 43200 > th dose independent rect. 5 9
373 237.96 precipitation 0.1 43200 > th dose dependent rect. 4 22
385 238.02 precipitation 0.1 43200 > th dose dependent rect. 5 9
389 238.03 precipitation 0.1 43200 > th dose dependent rect. 4 19
390 238.04 wind 5.0 43200 > th dose independent rect. 5 3
408 238.10 radiation 30.0 1440 < th dose independent rect. 15 17
409 238.11 wind 5.0 43200 < th dose independent rect. 5 3
412 238.13 precipitation 0.1 43200 < th dose independent rect. 19 3
416 238.13 precipitation 0.1 43200 < th dose dependent rect. 19 3
442 238.21 wind 5.0 43200 > th dose independent rect. 8 3
444 238.21 humidity 80.0 1440 < th dose dependent rect. 18 3
449 238.22 precipitation 0.1 43200 > th dose dependent sin 0 NA
450 238.22 precipitation 0.1 43200 > th dose dependent rect. 19 3
451 238.23 radiation 30.0 1440 < th dose independent rect. 15 3
454 238.23 temperature 25.0 43200 < th dose dependent rect. 9 1
457 238.24 precipitation 0.1 43200 > th dose independent rect. 19 3
470 238.29 precipitation 0.1 43200 < th dose independent sin 0 NA
472 238.29 precipitation 0.1 43200 < th dose dependent sin 0 NA
476 238.30 precipitation 0.1 43200 > th dose independent sin 0 NA
482 238.33 temperature 25.0 14400 < th dose independent rect. 5 1
488 238.35 wind 5.0 43200 < th dose independent rect. 8 3
489 238.35 radiation 30.0 1440 < th dose independent rect. 15 14
497 238.37 radiation 30.0 1440 < th dose independent rect. 15 1
524 238.41 temperature 25.0 14400 > th dose dependent rect. 19 1
534 238.43 precipitation 0.1 43200 > th dose dependent rect. 5 12
539 238.44 humidity 80.0 1440 < th dose dependent rect. 19 1
542 238.44 precipitation 0.1 43200 > th dose dependent rect. 8 23
547 238.46 precipitation 0.1 43200 > th dose dependent rect. 24 22
562 238.50 radiation 30.0 1440 > th dose independent rect. 15 17
574 238.52 temperature 25.0 43200 > th dose independent rect. 12 1
576 238.53 radiation 30.0 1440 < th dose independent rect. 15 8
584 238.55 wind 1.0 43200 < th dose dependent rect. 3 1
608 238.61 precipitation 0.1 43200 > th dose dependent rect. 19 11
618 238.64 temperature 30.0 14400 > th dose dependent rect. 16 3
642 238.66 temperature 25.0 14400 > th dose dependent rect. 19 5
657 238.69 precipitation 0.1 43200 > th dose dependent no NA NA
662 238.69 precipitation 0.1 43200 > th dose dependent rect. 11 23
666 238.70 temperature 25.0 14400 > th dose dependent rect. 19 11
673 238.71 precipitation 0.1 43200 > th dose dependent rect. 16 23
691 238.74 precipitation 0.1 43200 > th dose dependent rect. 7 13
692 238.74 precipitation 0.1 43200 > th dose dependent rect. 13 23
698 238.75 precipitation 0.1 43200 > th dose dependent rect. 19 7
710 238.77 precipitation 0.1 43200 > th dose dependent rect. 19 23
719 238.79 temperature 25.0 14400 > th dose independent rect. 4 3
758 238.85 temperature 25.0 14400 > th dose dependent rect. 22 1
770 238.89 wind 1.0 43200 < th dose independent rect. 3 1
777 238.90 temperature 25.0 14400 < th dose independent rect. 4 3
788 238.91 precipitation 0.1 43200 > th dose dependent rect. 21 23
796 238.92 precipitation 0.1 43200 > th dose dependent rect. 13 17
805 238.95 temperature 30.0 14400 < th dose independent rect. 11 1
886 239.08 temperature 30.0 14400 > th dose independent rect. 17 2
907 239.09 temperature 25.0 14400 > th dose independent rect. 5 1
909 239.09 humidity 90.0 43200 > th dose dependent rect. 9 4
935 239.15 radiation 30.0 1440 > th dose independent rect. 15 1
936 239.15 precipitation 0.1 43200 < th dose independent rect. 13 21
937 239.15 precipitation 0.1 43200 > th dose dependent sin 13 NA
941 239.15 precipitation 0.1 43200 < th dose dependent rect. 13 21
966 239.17 precipitation 0.1 43200 > th dose independent rect. 16 14
968 239.17 precipitation 0.1 43200 > th dose independent rect. 13 21
971 239.18 temperature 30.0 14400 < th dose independent rect. 17 12
972 239.18 temperature 30.0 14400 < th dose independent rect. 17 14
978 239.19 temperature 30.0 14400 < th dose independent rect. 17 2