Os02g0651300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0651300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.03 | 0.373 | 14.8 | -0.229 | 0.305 | -0.721 | -0.706 | 1.25 | 0.0553 | 7.53 | 57 | 155 | -- | -- |
| 64.5 | 0.374 | 14.8 | -0.246 | 0.302 | -0.572 | -0.733 | -- | 0.0675 | 7.18 | 56.4 | 143 | -- | -- |
| 64.33 | 0.374 | 14.7 | -0.231 | 0.304 | -0.71 | -- | 1.32 | 0.0608 | 7.85 | 57 | 163 | -- | -- |
| 65.54 | 0.377 | 14.8 | -0.285 | 0.332 | -0.521 | -- | -- | 0.0733 | 7.91 | 57 | 94 | -- | -- |
| 68.85 | 0.386 | 14.8 | -0.208 | -- | -0.957 | -- | 1.7 | 0.0588 | -- | 54.59 | 168 | -- | -- |
| 71.18 | 0.396 | 14.7 | -0.293 | 0.402 | -- | -0.543 | -- | 0.113 | 6.75 | -- | -- | -- | -- |
| 71.91 | 0.397 | 14.7 | -0.301 | 0.4 | -- | -- | -- | 0.115 | 6.93 | -- | -- | -- | -- |
| 70.35 | 0.391 | 14.8 | -0.228 | -- | -0.689 | -- | -- | 0.0663 | -- | 57 | 249 | -- | -- |
| 67.48 | 0.383 | 14.7 | -- | 0.312 | -0.553 | -- | -- | 0.1 | 8.05 | 56.96 | 147 | -- | -- |
| 80.3 | 0.419 | 14.8 | -0.293 | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
| 74.31 | 0.403 | 14.7 | -- | 0.396 | -- | -- | -- | 0.148 | 6.98 | -- | -- | -- | -- |
| 69.22 | 0.387 | 14.7 | -- | -- | -0.546 | -- | -- | 0.137 | -- | 72.99 | 555 | -- | -- |
| 82.57 | 0.424 | 14.7 | -- | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 3 | 53.94 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 5 |
| 6 | 54.84 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 1 |
| 26 | 56.62 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 52 | 57.46 | temperature | 25 | 90 | > th | dose independent | rect. | 15 | 16 |
| 54 | 57.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 69 | 57.88 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 16 |
| 77 | 58.07 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 9 |
| 129 | 58.87 | humidity | 60 | 90 | > th | dose independent | rect. | 8 | 8 |
| 176 | 59.36 | humidity | 50 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 178 | 59.40 | humidity | 60 | 270 | > th | dose independent | rect. | 18 | 21 |
| 188 | 59.57 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 8 |
| 195 | 59.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 5 |
| 202 | 59.75 | temperature | 25 | 90 | > th | dose independent | rect. | 15 | 8 |
| 263 | 60.09 | humidity | 60 | 90 | > th | dose independent | rect. | 8 | 20 |
| 265 | 60.10 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 8 | 7 |
| 294 | 60.24 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 355 | 60.57 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 9 |
| 361 | 60.59 | humidity | 60 | 90 | > th | dose independent | rect. | 21 | 18 |
| 366 | 60.60 | humidity | 50 | 10 | > th | dose dependent | rect. | 10 | 6 |
| 378 | 60.67 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 412 | 60.79 | radiation | 1 | 90 | > th | dose independent | rect. | 16 | 15 |
| 433 | 60.86 | humidity | 60 | 90 | > th | dose independent | rect. | 23 | 16 |
| 460 | 60.97 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 8 |
| 495 | 61.09 | radiation | 1 | 90 | > th | dose independent | sin | 12 | NA |
| 510 | 61.12 | humidity | 50 | 30 | > th | dose dependent | rect. | 8 | 20 |
| 563 | 61.29 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 605 | 61.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 619 | 61.46 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 5 |
| 620 | 61.46 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 14 |
| 661 | 61.57 | humidity | 60 | 30 | > th | dose independent | rect. | 12 | 16 |
| 701 | 61.66 | temperature | 25 | 90 | < th | dose independent | rect. | 19 | 9 |
| 713 | 61.71 | radiation | 1 | 270 | < th | dose independent | rect. | 11 | 16 |
| 722 | 61.72 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 729 | 61.74 | radiation | 1 | 270 | > th | dose independent | rect. | 15 | 3 |
| 733 | 61.74 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 742 | 61.76 | temperature | 25 | 10 | > th | dose independent | sin | 13 | NA |
| 782 | 61.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 791 | 61.86 | radiation | 1 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 796 | 61.88 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 826 | 61.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 833 | 61.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 840 | 61.98 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 854 | 62.00 | temperature | 25 | 30 | < th | dose independent | sin | 13 | NA |
| 871 | 62.02 | radiation | 20 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 884 | 62.05 | humidity | 50 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 901 | 62.09 | radiation | 1 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 904 | 62.10 | humidity | 80 | 270 | < th | dose independent | rect. | 13 | 6 |
| 907 | 62.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 925 | 62.12 | radiation | 20 | 720 | > th | dose independent | rect. | 15 | 17 |
| 931 | 62.12 | humidity | 50 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 934 | 62.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 935 | 62.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 963 | 62.17 | temperature | 20 | 10 | > th | dose dependent | sin | 12 | NA |
| 994 | 62.21 | humidity | 50 | 30 | > th | dose dependent | rect. | 12 | 16 |
| 995 | 62.22 | humidity | 80 | 270 | < th | dose independent | rect. | 14 | 4 |