BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0651300 Os02g0651300|AK099767
(332 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G61670.1 | chr5:24783629-24785201 FORWARD LENGTH=308 391 e-109
AT5G06130.2 | chr5:1853754-1855763 REVERSE LENGTH=316 302 1e-82
>AT5G61670.1 | chr5:24783629-24785201 FORWARD LENGTH=308
Length = 307
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/246 (77%), Positives = 204/246 (82%)
Query: 87 GFCIIEGPETVQDFEKLDLQEIQDNIRSRRNKIFLHMEEXXXXXXXXXXKNVELGISVDV 146
GFCIIEGPETVQDF K+ LQEIQDNIRSRRNKIFLHMEE KN ELGI +
Sbjct: 62 GFCIIEGPETVQDFAKMQLQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNTELGIINEE 121
Query: 147 PEGEXXXXXXXXXXXXXXSAANLKIYYATCFTLIAGIMVFGGFLAPILELKLGVGGTSYA 206
E E +AANLK+YYATCF+LIAGI++FGG LAP LELKLG+GGTSYA
Sbjct: 122 QEHELPNFPSFIPFLPPLTAANLKVYYATCFSLIAGIILFGGLLAPTLELKLGIGGTSYA 181
Query: 207 DFIRSVHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEHKRCKYCLGTGYLAC 266
DFI+S+HLPMQLSQVDPIVASFSGGAVGVISALMVVE+NNVKQQEHKRCKYCLGTGYLAC
Sbjct: 182 DFIQSLHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKYCLGTGYLAC 241
Query: 267 ARCSSTGTLVLTEPVSTFSDGDQPLSTPRTERCPNCSGAGKVMCPTCLCTGMAMASEHDP 326
ARCSSTG LVLTEPVS + G+ LS P+TERC NCSGAGKVMCPTCLCTGMAMASEHDP
Sbjct: 242 ARCSSTGALVLTEPVSAIAGGNHSLSPPKTERCSNCSGAGKVMCPTCLCTGMAMASEHDP 301
Query: 327 RIDPFD 332
RIDPFD
Sbjct: 302 RIDPFD 307
>AT5G06130.2 | chr5:1853754-1855763 REVERSE LENGTH=316
Length = 315
Score = 302 bits (774), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 149/247 (60%), Positives = 177/247 (71%), Gaps = 1/247 (0%)
Query: 87 GFCIIEGPETVQDFEKLDLQEIQDNIRSRRNKIFLHMEEXXXXXXXXXXKNVE-LGISVD 145
FCIIEG ETVQDF ++ LQEIQDNIRSRRNKIFL MEE K+V+ + +
Sbjct: 69 NFCIIEGSETVQDFVQMQLQEIQDNIRSRRNKIFLLMEEVRRLRVQQRIKSVKAINEDSE 128
Query: 146 VPEGEXXXXXXXXXXXXXXSAANLKIYYATCFTLIAGIMVFGGFLAPILELKLGVGGTSY 205
+ E + LK Y+T LI+GI+ FGG +AP LELK+G+GGTSY
Sbjct: 129 LEATEMPEITSSIPFLPNVTPKTLKQLYSTSVALISGIIFFGGLIAPNLELKVGLGGTSY 188
Query: 206 ADFIRSVHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEHKRCKYCLGTGYLA 265
DFIRS+HLP+QLSQVDPIVASFSGGAVGVIS LM++E+NNVKQQE KRCKYCLGTGYL
Sbjct: 189 EDFIRSLHLPLQLSQVDPIVASFSGGAVGVISTLMLIEVNNVKQQEKKRCKYCLGTGYLP 248
Query: 266 CARCSSTGTLVLTEPVSTFSDGDQPLSTPRTERCPNCSGAGKVMCPTCLCTGMAMASEHD 325
CARCS++G + +P++ +Q + T+RC NCSGAGKVMCPTCLCTGM ASEHD
Sbjct: 249 CARCSASGVCLSIDPITRPRATNQLMQVATTKRCLNCSGAGKVMCPTCLCTGMVTASEHD 308
Query: 326 PRIDPFD 332
PR DPFD
Sbjct: 309 PRFDPFD 315
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,203,397
Number of extensions: 184831
Number of successful extensions: 490
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,392,385
Effective search space: 1955425705
Effective search space used: 1955425705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)