Os02g0651000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0651000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.16 | 0.275 | 10.4 | -0.0052 | 0.212 | 0.389 | -0.167 | 2.71 | -0.316 | 1.43 | 30.03 | 2041 | -- | -- |
| 34.51 | 0.274 | 10.5 | -0.393 | 0.219 | 0.683 | -0.146 | -- | -0.315 | 1.18 | 30.3 | 2024 | -- | -- |
| 34.25 | 0.273 | 10.4 | -0.000357 | 0.216 | 0.378 | -- | 2.79 | -0.314 | 1.5 | 30.29 | 2039 | -- | -- |
| 34.58 | 0.274 | 10.5 | -0.387 | 0.211 | 0.689 | -- | -- | -0.318 | 1.4 | 30.3 | 2028 | -- | -- |
| 36.79 | 0.282 | 10.4 | 0.000931 | -- | 0.371 | -- | 2.6 | -0.305 | -- | 30.3 | 2249 | -- | -- |
| 47.8 | 0.324 | 10.5 | -0.245 | 0.243 | -- | -0.106 | -- | -0.42 | 0.451 | -- | -- | -- | -- |
| 47.85 | 0.324 | 10.5 | -0.241 | 0.244 | -- | -- | -- | -0.419 | 0.445 | -- | -- | -- | -- |
| 37.06 | 0.284 | 10.5 | -0.393 | -- | 0.679 | -- | -- | -0.309 | -- | 30.26 | 2230 | -- | -- |
| 38.49 | 0.289 | 10.5 | -- | 0.21 | 0.618 | -- | -- | -0.285 | 1.35 | 30.4 | 2007 | -- | -- |
| 51.58 | 0.336 | 10.5 | -0.233 | -- | -- | -- | -- | -0.415 | -- | -- | -- | -- | -- |
| 49.38 | 0.329 | 10.5 | -- | 0.24 | -- | -- | -- | -0.393 | 0.394 | -- | -- | -- | -- |
| 40.95 | 0.298 | 10.5 | -- | -- | 0.621 | -- | -- | -0.273 | -- | 30.3 | 2188 | -- | -- |
| 53.01 | 0.34 | 10.5 | -- | -- | -- | -- | -- | -0.39 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.46 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 15 | 34.50 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 17 | 34.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 23 | 34.63 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 24 | 34.64 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 41 | 34.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 46 | 34.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 50 | 34.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 58 | 34.78 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 107 | 34.90 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 19 |
| 108 | 34.91 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 18 |
| 110 | 34.91 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 20 |
| 130 | 34.96 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 22 |
| 164 | 35.01 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 165 | 35.01 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 22 |
| 171 | 35.04 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 186 | 35.06 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 239 | 35.13 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 16 |
| 265 | 35.16 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 23 |
| 303 | 35.22 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 10 |
| 304 | 35.23 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 14 |
| 347 | 35.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 413 | 35.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 427 | 35.31 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 432 | 35.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 501 | 35.38 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 512 | 35.40 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 515 | 35.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 531 | 35.42 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 559 | 35.46 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 585 | 35.48 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 592 | 35.48 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 606 | 35.49 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 13 |
| 634 | 35.52 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 770 | 35.55 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 781 | 35.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 20 |
| 807 | 35.57 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 888 | 35.57 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |