BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0651000 Os02g0651000|AK062626
         (188 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51170.1  | chr5:20793906-20795330 REVERSE LENGTH=286          222   8e-59

>AT5G51170.1 | chr5:20793906-20795330 REVERSE LENGTH=286
          Length = 285

 Score =  222 bits (566), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 107/188 (56%), Positives = 137/188 (72%), Gaps = 1/188 (0%)

Query: 1   MRRAASFVPDLYAIDADYALSELCKDEQKLEKVLLSREFHVSLGRTVAIQVHQIESLVAM 60
           +++ AS VP L+ ++AD  LS LCKD+QK E+ L  REFH+SLGR V ++VHQI S+++M
Sbjct: 98  LKKVASVVPHLHLVEADVPLSILCKDDQKFERAL-GREFHISLGRNVPLRVHQINSVISM 156

Query: 61  LRQKFRSQQRYWMDFNKWEHFVNDDCTRSFLSLEVTSTGLPEISKQITMVDDVYRLHGLP 120
           LRQK + Q+RY +DFNKWE FVNDD TRSFLSLE+T++GL EISKQI  V++VY+LH LP
Sbjct: 157 LRQKLQLQKRYLIDFNKWEVFVNDDHTRSFLSLEITTSGLSEISKQIDAVNEVYKLHNLP 216

Query: 121 EFYKNPRPHISLAWALGDVSCKLKQAIKEIEKSQSSLGTSQISNLRCKFSHVVCKIGKKV 180
           EFYK+PRPHISL WALGD+   LK A+    +   + G  Q      KF  + CKIG K 
Sbjct: 217 EFYKDPRPHISLVWALGDIRTSLKGAVDVELRKLRAGGCVQNRIFTSKFCGIECKIGNKT 276

Query: 181 YDICKLAD 188
           + ICKL D
Sbjct: 277 HKICKLPD 284



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,950,792
Number of extensions: 146633
Number of successful extensions: 378
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 95
Effective length of database: 8,556,881
Effective search space: 812903695
Effective search space used: 812903695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)