Os02g0650300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Oligopeptide transporter OPT superfamily protein.
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Os02g0650300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Oligopeptide transporter OPT superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 385.2 | 0.922 | 3.14 | 0.00998 | 0.201 | 9.11 | -0.511 | 17.6 | -0.38 | 4.15 | 1015 | 1438 | 0.017 | 11 |
| 388.32 | 0.918 | 3.05 | -0.291 | 0.151 | 5.95 | -0.396 | -- | -0.401 | 1.91 | 1017 | 1564 | 1.59 | 11.5 |
| 385.84 | 0.915 | 3.14 | 0.0241 | 0.202 | 9.5 | -- | 18.5 | -0.384 | 4.61 | 1015 | 1439 | 0.0245 | 10.9 |
| 386.09 | 0.915 | 3.06 | -0.207 | 0.23 | 5.7 | -- | -- | -0.401 | 4.69 | 1017 | 1593 | 0.101 | 13.1 |
| 387.99 | 0.917 | 3.14 | 0.0416 | -- | 9.64 | -- | 18.8 | -0.376 | -- | 1015 | 1439 | 0.018 | 10.9 |
| 419.84 | 0.961 | 3.05 | -0.191 | 0.207 | -- | -0.465 | -- | -0.405 | 4.39 | -- | -- | -- | -- |
| 420.19 | 0.96 | 3.05 | -0.187 | 0.218 | -- | -- | -- | -0.403 | 5.52 | -- | -- | -- | -- |
| 388.19 | 0.918 | 3.05 | -0.168 | -- | 5.51 | -- | -- | -0.371 | -- | 1017 | 1569 | 0.105 | 13.1 |
| 386.78 | 0.916 | 3.04 | -- | 0.201 | 5.51 | -- | -- | -0.354 | 4.68 | 1017 | 1593 | 0.116 | 13 |
| 422.66 | 0.961 | 3.05 | -0.179 | -- | -- | -- | -- | -0.398 | -- | -- | -- | -- | -- |
| 421.11 | 0.96 | 3.05 | -- | 0.215 | -- | -- | -- | -0.382 | 5.56 | -- | -- | -- | -- |
| 388.95 | 0.919 | 3.04 | -- | -- | 5.53 | -- | -- | -0.349 | -- | 1017 | 1560 | 0.116 | 13 |
| 423.51 | 0.961 | 3.05 | -- | -- | -- | -- | -- | -0.378 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 385.29 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 24 | 11 |
| 5 | 385.89 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 6 | 386.10 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 24 | 11 |
| 7 | 386.40 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 17 | 386.91 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 4 |
| 19 | 386.95 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 34 | 386.95 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 53 | 387.08 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 54 | 387.11 | atmosphere | 1010.0 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 72 | 387.36 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 92 | 388.25 | atmosphere | 1010.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 173 | 390.46 | atmosphere | 1015.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 220 | 390.55 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 24 | 20 |
| 241 | 390.74 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 278 | 391.73 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 5 | 2 |
| 281 | 392.10 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 285 | 392.58 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 286 | 392.59 | humidity | 50.0 | 90 | < th | dose independent | rect. | 13 | 2 |
| 290 | 392.82 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 294 | 392.95 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 298 | 393.18 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 299 | 393.18 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 339 | 394.58 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 345 | 394.78 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 350 | 394.85 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 362 | 394.90 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 363 | 394.94 | atmosphere | 1015.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 364 | 394.94 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 374 | 395.00 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 383 | 395.06 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 418 | 395.29 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 8 | 12 |
| 461 | 395.83 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 471 | 396.13 | wind | 7.0 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 478 | 396.18 | wind | 7.0 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 486 | 396.39 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 7 | 16 |
| 489 | 396.46 | humidity | 90.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 491 | 396.48 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 500 | 396.68 | atmosphere | 1015.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 504 | 396.87 | humidity | 90.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 505 | 396.87 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 1 | 9 |
| 536 | 397.19 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 538 | 397.21 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 549 | 397.27 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 566 | 397.38 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 12 | 8 |
| 589 | 397.63 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 615 | 397.86 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 616 | 397.86 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 5 | 10 |
| 630 | 397.98 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 656 | 398.24 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 10 | 10 |
| 663 | 398.28 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 4 | 15 |
| 688 | 398.52 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 703 | 398.64 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 2 |
| 705 | 398.64 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 2 |
| 710 | 398.65 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 3 | 17 |
| 734 | 398.78 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 749 | 398.90 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 754 | 398.95 | humidity | 90.0 | 720 | > th | dose independent | rect. | 22 | 1 |
| 768 | 399.11 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 5 | 13 |
| 799 | 399.38 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 806 | 399.44 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 8 | 12 |
| 814 | 399.54 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 24 | 12 |
| 817 | 399.56 | temperature | 15.0 | 4320 | < th | dose dependent | sin | 0 | NA |
| 820 | 399.57 | wind | 7.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 857 | 400.01 | wind | 5.0 | 4320 | < th | dose independent | rect. | 24 | 11 |
| 861 | 400.02 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 5 | 10 |
| 875 | 400.17 | humidity | 90.0 | 720 | < th | dose independent | rect. | 14 | 9 |
| 886 | 400.27 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 11 |
| 889 | 400.28 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 891 | 400.28 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 894 | 400.29 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 19 | 16 |
| 926 | 400.53 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 5 | 7 |
| 937 | 400.59 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 964 | 400.68 | temperature | 20.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 982 | 400.78 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 992 | 400.86 | humidity | 90.0 | 720 | < th | dose independent | rect. | 22 | 1 |