BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0650300 Os02g0650300|AK063464
(125 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G24120.1 | chr4:12524581-12527023 FORWARD LENGTH=674 169 3e-43
AT5G53550.1 | chr5:21756081-21758776 FORWARD LENGTH=676 167 9e-43
AT5G24380.1 | chr5:8324098-8326525 FORWARD LENGTH=665 166 2e-42
AT3G27020.1 | chr3:9961623-9964461 REVERSE LENGTH=677 140 2e-34
AT1G65730.1 | chr1:24442639-24446122 FORWARD LENGTH=689 139 4e-34
AT5G41000.1 | chr5:16420910-16423697 FORWARD LENGTH=671 138 7e-34
AT3G17650.1 | chr3:6034307-6037087 FORWARD LENGTH=715 125 5e-30
AT1G48370.1 | chr1:17874560-17877256 FORWARD LENGTH=725 120 2e-28
>AT4G24120.1 | chr4:12524581-12527023 FORWARD LENGTH=674
Length = 673
Score = 169 bits (428), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 91/112 (81%)
Query: 8 HDRLQLHGFLKYFGLSLFWSFFQWFYTGGNACGFVQFPTFGLKAWKQSFFFDFSLTYVGA 67
+ Q+ GF+KYF S W FFQWF++G CGF QFPTFGLKAWKQ+FFFDFS+T+VGA
Sbjct: 217 QAKKQVRGFMKYFSFSFLWGFFQWFFSGIEDCGFAQFPTFGLKAWKQTFFFDFSMTFVGA 276
Query: 68 GMICSHLVNLSTLLGAVISWGIMWPLISKHKGDWYPANIPESSMTSLYGYKV 119
GMICSHLVNLS LLGA++S+G+MWPL+ K KG W+P N+ E +M S+YGYKV
Sbjct: 277 GMICSHLVNLSLLLGAILSYGLMWPLLDKLKGSWFPDNLDEHNMKSIYGYKV 328
>AT5G53550.1 | chr5:21756081-21758776 FORWARD LENGTH=676
Length = 675
Score = 167 bits (424), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 73/110 (66%), Positives = 91/110 (82%)
Query: 10 RLQLHGFLKYFGLSLFWSFFQWFYTGGNACGFVQFPTFGLKAWKQSFFFDFSLTYVGAGM 69
+ Q+ GF+KYF S W+FFQWF++GG CGF+QFPTFGL+A K +F+FDFS+TYVGAGM
Sbjct: 216 KKQVFGFVKYFSFSFIWAFFQWFFSGGTECGFIQFPTFGLEALKNTFYFDFSMTYVGAGM 275
Query: 70 ICSHLVNLSTLLGAVISWGIMWPLISKHKGDWYPANIPESSMTSLYGYKV 119
IC H+VN+S L GAV+SWGIMWPLI KGDW+P+ +PE+SM SL GYKV
Sbjct: 276 ICPHIVNISLLFGAVLSWGIMWPLIKGLKGDWFPSTLPENSMKSLNGYKV 325
>AT5G24380.1 | chr5:8324098-8326525 FORWARD LENGTH=665
Length = 664
Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 73/110 (66%), Positives = 92/110 (83%)
Query: 10 RLQLHGFLKYFGLSLFWSFFQWFYTGGNACGFVQFPTFGLKAWKQSFFFDFSLTYVGAGM 69
+ Q+ GF+K FGLS FW+FF WFY+GG CGF QFPTFGL+A ++F+FDFS+TYVGAGM
Sbjct: 204 KKQIRGFIKSFGLSFFWAFFGWFYSGGEKCGFSQFPTFGLQALDKTFYFDFSMTYVGAGM 263
Query: 70 ICSHLVNLSTLLGAVISWGIMWPLISKHKGDWYPANIPESSMTSLYGYKV 119
ICSHLVNLS L GA++SWGIMWPLI++ KG+W+PA + ++SM L GYKV
Sbjct: 264 ICSHLVNLSLLFGAILSWGIMWPLIARLKGEWFPATLKDNSMQGLNGYKV 313
>AT3G27020.1 | chr3:9961623-9964461 REVERSE LENGTH=677
Length = 676
Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/109 (57%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 12 QLHGFLKYFGLSLFWSFFQWFYTG-GNACGFVQFPTFGLKAWKQSFFFDFSLTYVGAGMI 70
Q+ KY LSL WS F+WF++G G+ACGF FPT GL +K +F+FDFS TY+G G+I
Sbjct: 213 QVKCLGKYLSLSLIWSCFKWFFSGIGDACGFDNFPTLGLTLFKNTFYFDFSPTYIGCGLI 272
Query: 71 CSHLVNLSTLLGAVISWGIMWPLISKHKGDWYPANIPESSMTSLYGYKV 119
C H+VN S LLGA+ISWGI+WP +S+H GDWYPA++ + LYGYKV
Sbjct: 273 CPHIVNCSVLLGAIISWGILWPFVSQHAGDWYPADLGSNDFKGLYGYKV 321
>AT1G65730.1 | chr1:24442639-24446122 FORWARD LENGTH=689
Length = 688
Score = 139 bits (349), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 79/110 (71%)
Query: 10 RLQLHGFLKYFGLSLFWSFFQWFYTGGNACGFVQFPTFGLKAWKQSFFFDFSLTYVGAGM 69
+ Q+ K+F S W FFQWF+ G+ CGF FPTFGLKA++ F+FDFS TYVG GM
Sbjct: 214 KKQVRALGKFFSFSFLWGFFQWFFATGDGCGFANFPTFGLKAYENKFYFDFSATYVGVGM 273
Query: 70 ICSHLVNLSTLLGAVISWGIMWPLISKHKGDWYPANIPESSMTSLYGYKV 119
IC +L+N+S L+GA++SWG+MWPLI KG WY A++ +S+ L GY+V
Sbjct: 274 ICPYLINVSLLIGAILSWGVMWPLIGAQKGKWYAADLSSTSLHGLQGYRV 323
>AT5G41000.1 | chr5:16420910-16423697 FORWARD LENGTH=671
Length = 670
Score = 138 bits (347), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 64/109 (58%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Query: 12 QLHGFLKYFGLSLFWSFFQWFYTG-GNACGFVQFPTFGLKAWKQSFFFDFSLTYVGAGMI 70
Q+ KY LSL WS F+WF++G G ACGF FPT GL +K +F+FDFS T++G GMI
Sbjct: 210 QVKCLGKYLSLSLVWSCFKWFFSGIGGACGFDHFPTLGLTLFKNTFYFDFSPTFIGCGMI 269
Query: 71 CSHLVNLSTLLGAVISWGIMWPLISKHKGDWYPANIPESSMTSLYGYKV 119
C HLVN S LLGA+ISWG +WP IS+H GDWYPA++ + LYGYKV
Sbjct: 270 CPHLVNCSVLLGAIISWGFLWPFISQHAGDWYPADLKANDFKGLYGYKV 318
>AT3G17650.1 | chr3:6034307-6037087 FORWARD LENGTH=715
Length = 714
Score = 125 bits (314), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 69/89 (77%)
Query: 31 WFYTGGNACGFVQFPTFGLKAWKQSFFFDFSLTYVGAGMICSHLVNLSTLLGAVISWGIM 90
WF+TGG CGF FPTFGLKA++ F+FDFS TYVG GMIC +++N+S LLG ++SWGIM
Sbjct: 252 WFFTGGENCGFSNFPTFGLKAYQYKFYFDFSATYVGVGMICPYIINISVLLGGILSWGIM 311
Query: 91 WPLISKHKGDWYPANIPESSMTSLYGYKV 119
WPLI KGDW+P N+P SSM L YKV
Sbjct: 312 WPLIETKKGDWFPDNVPSSSMHGLQAYKV 340
>AT1G48370.1 | chr1:17874560-17877256 FORWARD LENGTH=725
Length = 724
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 65/86 (75%)
Query: 34 TGGNACGFVQFPTFGLKAWKQSFFFDFSLTYVGAGMICSHLVNLSTLLGAVISWGIMWPL 93
T G CGF FPTFGL+A++ F+FDFS TYVG GMIC +++N+S LLG ++SWG+MWPL
Sbjct: 264 TAGENCGFNSFPTFGLRAYQYKFYFDFSATYVGVGMICPYIINISLLLGGILSWGLMWPL 323
Query: 94 ISKHKGDWYPANIPESSMTSLYGYKV 119
I KGDW+P+N+ SSM L YKV
Sbjct: 324 IETRKGDWFPSNVDSSSMNGLQAYKV 349
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.142 0.497
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,073,959
Number of extensions: 122619
Number of successful extensions: 324
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 8
Length of query: 125
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 39
Effective length of database: 8,748,793
Effective search space: 341202927
Effective search space used: 341202927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 105 (45.1 bits)