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Os02g0649400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function UPF0017, hydrolase-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0343) R2 : 0.857
β1 : -0.593 (0.127) R2dD : 0.00642 R2D : -0.00977
β2 : 4.36 (0.0874) R2dC : 0.782 R2C : 0.771
β3 : -1.63 (0.157) R2dE : 0.0425 R2E : 0.0146
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.81 (0.473) R2dD*E : 0.0344 R2D*E : -0.00239
γ1 : -0.882 (0.0755) R2dN8 : 0.0627 R2N8 : 0.0049
σ : 0.635
deviance : 185.76
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C
peak time of C : 7.51
E
wheather : radiation
threshold : 16.04
memory length : 1330
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.3
open length of G : 0.983

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
179.24 0.629 11.1 -0.61 4.33 -1.51 1.7 4.3 -0.886 7.51 17.31 1322 11.2 1.15
204.11 0.665 11 -0.483 4.27 -1.28 1.7 -- -0.825 7.51 21.51 1173 11.8 1.5
185.76 0.635 11.1 -0.593 4.36 -1.63 -- 4.81 -0.882 7.51 16.04 1330 11.3 0.983
208.06 0.672 11.1 -0.422 4.22 -1.15 -- -- -0.846 7.36 23.87 1248 12.3 1
301.33 0.808 11.2 -0.0647 -- -3.8 -- -1.96 -0.616 -- 229 583 12.9 3.77
242.79 0.73 11 -0.292 4.38 -- 1.41 -- -0.613 7.54 -- -- -- --
248.29 0.738 11 -0.259 4.39 -- -- -- -0.616 7.52 -- -- -- --
226.69 0.701 11.1 -0.427 -- -4.88 -- -- -0.62 -- 193.3 507 10.5 9.37
204.51 0.666 11.1 -- 4.23 -1.26 -- -- -0.858 7.32 21.7 1256 12.9 0.217
1277.34 1.67 11.1 -0.194 -- -- -- -- -0.547 -- -- -- -- --
250.06 0.74 11 -- 4.38 -- -- -- -0.587 7.52 -- -- -- --
226.26 0.701 11.1 -- -- -4.84 -- -- -0.609 -- 212.8 557 10.4 8.74
1278.33 1.67 11.1 -- -- -- -- -- -0.526 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 190.01 radiation 20 1440 < th dose dependent rect. 11 1
2 190.39 radiation 10 1440 > th dose independent rect. 11 1
4 193.40 radiation 1 1440 < th dose independent rect. 11 1
5 193.40 radiation 1 1440 < th dose dependent rect. 11 1
10 194.84 radiation 1 1440 < th dose independent rect. 9 3
11 194.84 radiation 1 1440 < th dose dependent rect. 9 3
13 194.90 radiation 1 1440 > th dose independent rect. 9 4
23 196.43 radiation 1 1440 < th dose independent rect. 13 1
26 196.43 radiation 1 1440 < th dose dependent rect. 13 1
49 198.09 radiation 20 1440 < th dose independent rect. 11 2
95 201.79 humidity 80 720 > th dose independent rect. 12 1
96 201.92 radiation 10 90 < th dose dependent sin 22 NA
102 202.47 radiation 1 90 > th dose independent sin 22 NA
106 202.62 humidity 80 720 > th dose dependent rect. 12 1
116 202.98 temperature 20 1440 > th dose independent rect. 6 1
118 203.05 temperature 20 1440 < th dose independent rect. 22 5
120 203.09 temperature 20 1440 > th dose independent rect. 22 5
121 203.10 radiation 1 1440 > th dose independent rect. 9 1
136 203.52 temperature 20 1440 < th dose independent rect. 23 2
146 203.68 temperature 20 1440 > th dose independent rect. 23 2
160 203.91 temperature 20 1440 > th dose independent rect. 1 2
177 204.38 radiation 1 90 < th dose dependent rect. 5 14
197 204.81 radiation 1 90 < th dose independent sin 23 NA
214 205.37 radiation 20 90 < th dose dependent rect. 7 14
217 205.43 radiation 10 1440 < th dose dependent rect. 9 13
228 205.59 radiation 10 1440 < th dose dependent rect. 9 18
241 205.74 radiation 20 1440 < th dose dependent rect. 11 11
254 205.87 radiation 20 1440 < th dose dependent rect. 11 16
265 206.16 radiation 1 1440 > th dose dependent rect. 11 2
269 206.29 temperature 20 1440 < th dose independent rect. 6 1
285 206.53 humidity 80 1440 < th dose independent rect. 8 6
315 206.82 radiation 1 1440 > th dose independent rect. 4 1
325 206.82 radiation 1 1440 > th dose dependent rect. 4 1
341 206.92 radiation 1 90 < th dose independent rect. 5 14
343 206.94 radiation 10 1440 < th dose dependent sin 20 NA
345 206.97 temperature 20 1440 < th dose independent rect. 22 9
351 207.06 temperature 20 1440 > th dose independent rect. 21 10
352 207.07 radiation 1 90 < th dose independent rect. 7 12
371 207.28 humidity 80 1440 > th dose independent rect. 11 3
412 207.69 atmosphere 995 43200 < th dose dependent rect. 11 17
414 207.70 atmosphere 995 43200 < th dose dependent rect. 11 21
430 207.79 atmosphere 995 43200 < th dose independent rect. 18 21
432 207.80 atmosphere 995 43200 < th dose independent rect. 21 18
466 208.02 radiation 10 1440 < th dose independent rect. 11 9
492 208.10 atmosphere 995 43200 < th dose dependent rect. 12 14
498 208.13 radiation 10 1440 < th dose independent rect. 11 16
517 208.25 radiation 10 1440 < th dose dependent rect. 23 6
541 208.50 radiation 1 90 > th dose independent rect. 9 9
545 208.53 atmosphere 995 43200 > th dose independent rect. 18 20
552 208.60 atmosphere 995 43200 < th dose independent sin 5 NA
554 208.61 atmosphere 995 43200 > th dose independent sin 5 NA
556 208.61 atmosphere 995 43200 > th dose independent rect. 22 17
557 208.61 atmosphere 995 43200 < th dose dependent sin 17 NA
562 208.64 temperature 20 1440 > th dose independent sin 11 NA
576 208.74 temperature 20 1440 < th dose independent sin 11 NA
611 208.92 radiation 1 90 > th dose independent rect. 9 21
618 208.97 humidity 50 10 > th dose dependent rect. 7 14
624 209.02 humidity 80 1440 < th dose independent rect. 11 3
636 209.09 humidity 80 30 < th dose independent rect. 10 8
638 209.10 humidity 70 14400 < th dose dependent rect. 21 1
654 209.16 temperature 20 1440 < th dose dependent rect. 2 2
668 209.26 radiation 1 90 < th dose independent rect. 5 16
697 209.45 humidity 90 720 < th dose dependent rect. 11 5
743 209.63 wind 1 1440 < th dose independent rect. 6 1
798 209.90 humidity 80 1440 > th dose independent rect. 8 6
861 210.15 radiation 30 4320 < th dose independent rect. 7 1
918 210.45 radiation 20 4320 > th dose dependent rect. 16 16
931 210.52 humidity 90 30 < th dose dependent rect. 10 8
936 210.55 temperature 20 90 < th dose independent rect. 15 12
950 210.61 wind 3 4320 > th dose independent rect. 8 1
959 210.66 wind 1 1440 > th dose independent rect. 6 1
974 210.75 temperature 20 90 < th dose independent sin 15 NA
976 210.76 radiation 10 1440 < th dose independent sin 18 NA
980 210.77 atmosphere 995 43200 < th dose dependent sin 8 NA