BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0649400 Os02g0649400|Os02g0649400
(469 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G50790.1 | chr3:18880074-18881940 REVERSE LENGTH=409 493 e-140
AT1G34340.1 | chr1:12530936-12534031 FORWARD LENGTH=531 191 1e-48
AT5G49950.1 | chr5:20319871-20323552 REVERSE LENGTH=538 189 3e-48
AT2G03140.2 | chr2:942000-950223 FORWARD LENGTH=1884 133 2e-31
>AT3G50790.1 | chr3:18880074-18881940 REVERSE LENGTH=409
Length = 408
Score = 493 bits (1270), Expect = e-140, Method: Compositional matrix adjust.
Identities = 231/344 (67%), Positives = 277/344 (80%), Gaps = 2/344 (0%)
Query: 85 DSLRRPYRAFPIVASNRHVETIFAAFARSLPAVALRRECLRTPDDGAVALDWVSGDDRAL 144
DSL +PY AFP++ NRHVETI+A+F RS+P V LRRECLRT D+G+VALDWV+G+DR
Sbjct: 59 DSLAKPYNAFPLIGFNRHVETIYASFFRSVPFVRLRRECLRTKDNGSVALDWVAGEDRHF 118
Query: 145 PRDAPVLILLPGLTGGSDDTYVRHMLLRARNKGWRVVVFNSRGCAGSPVTTAKFYSASFT 204
P D+P+LILLPGLTGGS D+YVRHMLLRA++K WR VVFNSRGC SPVTT +FYSASF
Sbjct: 119 PPDSPILILLPGLTGGSQDSYVRHMLLRAQSKKWRCVVFNSRGCGDSPVTTPQFYSASFL 178
Query: 205 GDLRQVVDHVLGRFPQSNVYAVGWSLGANILVRYLGEETDKCVLSGAVSLCNPFDLVIAD 264
GD+ +V+DHV+ +FP++N+YA GWSLG NILV YLG+E+ C L+ AVSLCNPFDLVIAD
Sbjct: 179 GDIGEVIDHVVDKFPKANLYAAGWSLGGNILVNYLGQESHNCPLTAAVSLCNPFDLVIAD 238
Query: 265 EDFHKGFNNVYDRALAKALRNIFKKHALLFEGLEGEYNIPKAANARSVRDFDEGLTRVSF 324
EDFHKGFNNVYD+AL+K+LR IF KH+LLFE + GE+NIP AANA +VRDFD+GLTRVSF
Sbjct: 239 EDFHKGFNNVYDKALSKSLRRIFSKHSLLFEDIGGEFNIPLAANAETVRDFDDGLTRVSF 298
Query: 325 GFXXXXXXXXXXXXXXXXXXXXXPLLCIQADNDPIAPSRGIPREDIKANPNCLLIVTPQG 384
GF PLLCIQA NDPIAP RGIPR+DIKANPNC+LIVTP+G
Sbjct: 299 GFKSVDEYYSKSSSSKAIKHVRIPLLCIQAANDPIAPERGIPRDDIKANPNCVLIVTPRG 358
Query: 385 GHLGWVAGEDAPFGCPWTDPIIMEFLEYVHNEKNSSTKGSISYE 428
GHLGWVAGE+AP G PWTD ++MEFL++V N + + G S+E
Sbjct: 359 GHLGWVAGEEAPNGAPWTDQVVMEFLQHVENRE--TINGERSFE 400
>AT1G34340.1 | chr1:12530936-12534031 FORWARD LENGTH=531
Length = 530
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 188/378 (49%), Gaps = 31/378 (8%)
Query: 76 ARCGLLAGFDSLRRPYRAFPIVASNRHVETIFAAFARSLPAVALRRECLRTPDDGAVALD 135
+RC +L G Y A P +AS H++T F F P R+ T D G +ALD
Sbjct: 77 SRCQILHG------RYVATPWLASP-HIQTCFLNFHGLPPVFTYTRQLFLTSDGGTIALD 129
Query: 136 WVSGDD---------RALPRD--APVLILLPGLTGGSDDTYVRHMLLRARNKGWRVVVFN 184
W++ D + ++ P+ +++PGLT S Y++H+ GW VV+ N
Sbjct: 130 WLTNSDVLDGSLHNKSEITKEDTTPIAVVIPGLTSDSSSAYLKHLAYDTAKTGWNVVISN 189
Query: 185 SRGCAGSPVTTAKFYSASFTGDLRQVVDHVLGRFPQSNVYAVGWSLGANILVRYLGEETD 244
RG G VT+ FY+A +T D+R V+D++ ++P++ ++A+G S+GAN+LV+YLGEE +
Sbjct: 190 HRGLGGVSVTSDCFYNAGWTDDIRVVLDYLQHKYPRAPLFAIGTSIGANVLVKYLGEEGE 249
Query: 245 KCVLSGAVSLCNPFDLVIADEDFHKGF-NNVYDRALAKALRNIFKKHALLFEGLEGEYNI 303
K L GAV++C+P+DL+I D + +YD+AL L+ + H F L I
Sbjct: 250 KTPLRGAVAICSPWDLLIGDRFICRTLKQKLYDKALTIGLQGYAQLHEPQFLRLANWEGI 309
Query: 304 PKAANARSVRDFDEGLTRVSFGFXXXXXXXXXXXXXXXXXXXXXPLLCIQADNDPIAPSR 363
K +RS+RDFD T + F PLLCI A +DP+
Sbjct: 310 KK---SRSIRDFDNHATCLVGKFETVDTYYRKSSSTQYVGNVAVPLLCISALDDPLCTKE 366
Query: 364 GIPREDIKANPNCLLIVTPQGGHLGWVAGEDAPFGCPWTDPIIMEFL------EYVHNEK 417
IP ++ +AN N +L T GGHL + G W EFL Y+H +K
Sbjct: 367 AIPWDECRANKNIVLATTNHGGHLAFFEGLTG--SSLWWVRATNEFLGVLSCSPYMHIQK 424
Query: 418 NSSTKGSISYEQQ-SVTQ 434
+ S S +Q+ S+ Q
Sbjct: 425 IVDKRSSGSGKQEPSINQ 442
>AT5G49950.1 | chr5:20319871-20323552 REVERSE LENGTH=538
Length = 537
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/355 (32%), Positives = 173/355 (48%), Gaps = 37/355 (10%)
Query: 76 ARCGLLAGFDSLRRPYRAFPIV-ASNRHVETIFAAFARSLPAVALRRECLRTPDDGAVAL 134
++C LL G R FP S+ H++T F P + +R + D G +AL
Sbjct: 71 SKCRLLHG--------RYFPTFWLSSPHLQTAFLTLFGKSPPFSYKRILYQATDGGTIAL 122
Query: 135 DWVS-----------------GDDRALPRDAPVLILLPGLTGGSDDTYVRHMLLRARNKG 177
DW+ G DR P+ I++PGLT S Y++H+ R +G
Sbjct: 123 DWLMHSDVVEGISQVVNASNPGTDRT-----PIAIIVPGLTSDSSAAYIKHIAFRLAKEG 177
Query: 178 WRVVVFNSRGCAGSPVTTAKFYSASFTGDLRQVVDHVLGRFPQSNVYAVGWSLGANILVR 237
W VVV N RG G +T+ Y+A +T DLR+V+ H+ +FP++ ++AVG S+GAN+LV+
Sbjct: 178 WNVVVQNHRGLGGISLTSDCVYTAGWTEDLRKVIAHIHSQFPEAPLFAVGTSIGANVLVK 237
Query: 238 YLGEETDKCVLSGAVSLCNPFDLVIADEDFHKGF-NNVYDRALAKALRNIFKKHALLFEG 296
YLGE+ L GA ++C+P+DL+I D ++ VYDR L L+ + H +
Sbjct: 238 YLGEDGPNTPLIGATAVCSPWDLLICDRFINRKLVQKVYDRMLTIGLQGYAQLHHSIISR 297
Query: 297 LEGEYNIPKAANARSVRDFDEGLTRVSFGFXXXXXXXXXXXXXXXXXXXXXPLLCIQADN 356
+ I K +RSVR+FD TR+ F PLLCI A +
Sbjct: 298 IADWEGIKK---SRSVREFDNYATRLVAKFETTDTYYRRSSSSQYVENVAVPLLCISALD 354
Query: 357 DPIAPSRGIPREDIKANPNCLLIVTPQGGHLGWVAGEDAPFGCPWTDPIIMEFLE 411
DP+ IP ++ +AN N +L T GGHL + G A W ++ E+ E
Sbjct: 355 DPVCTREAIPWDECRANKNIVLATTTHGGHLAYYEGLTA--SSMWWTRVVHEYFE 407
>AT2G03140.2 | chr2:942000-950223 FORWARD LENGTH=1884
Length = 1883
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 148/314 (47%), Gaps = 17/314 (5%)
Query: 77 RCGLLAGFDSLRRPYRAFPIVASNRHVETIFA-------AFARSLPAVALRRECLRTPDD 129
RC LL+ FD + +V RH T+ + A + +R C+ D
Sbjct: 122 RCSLLS-FDDDSEKSLSDRLVTEERHFVTLDSGKIVRDGAVTDEKTPLEYQRVCITMEDG 180
Query: 130 GAVALDWVSGDDRALPRDA-PVLILLPGLTGGSDDTYVRHMLLRARNKGWRVVVFNSRGC 188
G V+LDW + D R ++ +PG GS + VR + A +G VV N RGC
Sbjct: 181 GVVSLDWPANLDIREERGLDTTVVFIPGTPEGSMEEGVRSFVCEALRRGVFPVVMNPRGC 240
Query: 189 AGSPVTTAKFYSASFTGDLRQVVDHVLGRFPQSNVYAVGWSLGANILVRYLGEETDKCVL 248
AGSP+TT + ++A + D+ + + P + + AVG GAN+L +YL E ++ L
Sbjct: 241 AGSPLTTPRLFTAGDSDDISTALRFLSKTRPWTTLTAVGRGYGANMLTKYLAEAGERTPL 300
Query: 249 SGAVSLCNPFDLVIADEDFHKG--FNNVYDRALAKALRNIFKKHALLFEGLEGEYNIPKA 306
+ AV + NPFDL E+ + ++ D+ L + L I + LF+G +++ KA
Sbjct: 301 TAAVCIDNPFDL----EEITRTSPYSTSLDQQLTRGLVEILLANKELFQGRAKAFDVGKA 356
Query: 307 ANARSVRDFDEGLTRVSFGFXXXXXXXXXXXXXXXXXXXXXPLLCIQADNDPIAPSRGIP 366
++SVR+FD+ L+ V++G PLL IQ ND + P IP
Sbjct: 357 LCSKSVREFDKALSMVTYGCESIEDFYSSCATREVIGEVKVPLLFIQ--NDDVVPPYTIP 414
Query: 367 REDIKANPNCLLIV 380
R I NP L++
Sbjct: 415 RSSIAENPFTSLLL 428
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,317,448
Number of extensions: 367366
Number of successful extensions: 725
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 716
Number of HSP's successfully gapped: 4
Length of query: 469
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 367
Effective length of database: 8,310,137
Effective search space: 3049820279
Effective search space used: 3049820279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)