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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0646900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amine oxidase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0326) R2 : 0.0106
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.152 (0.0687) R2dN8 : 0.0136 R2N8 : 0.0106
σ : 0.615
deviance : 173.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
144.31 0.564 3 -0.39 0.0801 17.3 0.0445 -69.1 0.19 21 79.95 90 0.00386 6
168.48 0.609 2.91 -0.0531 0.0571 1.16 -0.574 -- 0.152 3.8 79.95 90 0.00386 6
144.3 0.559 3 -0.389 0.08 17.3 -- -69.1 0.19 21.1 79.95 90 0.285 6.21
158.98 0.587 2.87 0.00177 0.027 2.04 -- -- 0.241 3.29 82.87 147 0.333 5.58
144.67 0.56 3 -0.389 -- 17.3 -- -69 0.189 -- 79.89 90 0.282 6.22
172.32 0.615 2.91 -0.0283 0.0999 -- -0.363 -- 0.145 2.63 -- -- -- --
172.64 0.615 2.91 -0.0188 0.107 -- -- -- 0.148 0.772 -- -- -- --
157.75 0.585 2.9 -0.0155 -- 2.38 -- -- 0.176 -- 82.81 148 0.542 5.05
157.72 0.585 2.9 -- 0.0256 2.4 -- -- 0.183 2.06 82.37 149 0.549 5.12
173.35 0.615 2.91 -0.0149 -- -- -- -- 0.15 -- -- -- -- --
172.65 0.615 2.91 -- 0.106 -- -- -- 0.15 0.764 -- -- -- --
157.74 0.585 2.9 -- -- 2.39 -- -- 0.177 -- 82.82 149 0.545 5.01
173.36 0.615 2.91 -- -- -- -- -- 0.152 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 144.33 humidity 80.0 90 < th dose independent rect. 24 6
3 144.99 humidity 80.0 90 < th dose dependent rect. 24 6
5 145.88 humidity 80.0 90 < th dose dependent rect. 24 3
7 145.92 humidity 80.0 90 < th dose independent rect. 24 3
17 148.45 humidity 90.0 10 < th dose dependent rect. 2 2
22 149.62 humidity 90.0 10 < th dose independent rect. 2 2
54 156.37 atmosphere 1005.0 10 > th dose dependent rect. 3 1
80 159.36 radiation 30.0 43200 < th dose dependent rect. 23 1
91 159.69 radiation 10.0 4320 < th dose dependent rect. 23 1
107 160.46 temperature 20.0 10 < th dose dependent rect. 2 2
129 161.37 temperature 20.0 720 < th dose independent rect. 24 3
134 161.50 temperature 25.0 10 > th dose independent rect. 22 1
139 161.57 temperature 25.0 30 > th dose dependent rect. 22 1
144 161.68 wind 9.0 1440 < th dose independent rect. 23 1
145 161.68 temperature 10.0 1440 > th dose independent rect. 23 1
148 161.68 temperature 30.0 1440 < th dose independent rect. 23 1
152 161.68 humidity 50.0 1440 > th dose independent rect. 23 1
162 161.68 atmosphere 995.0 1440 > th dose independent rect. 23 1
163 161.68 radiation 1.0 1440 < th dose independent rect. 23 1
183 161.68 temperature 10.0 1440 > th dose independent rect. 24 23
200 161.87 humidity 90.0 30 < th dose independent rect. 22 1
215 162.06 atmosphere 1005.0 30 > th dose dependent rect. 22 1
218 162.11 temperature 20.0 90 < th dose independent rect. 1 3
220 162.18 humidity 90.0 30 < th dose dependent rect. 22 1
224 162.23 humidity 80.0 30 > th dose independent rect. 22 1
225 162.25 wind 3.0 30 < th dose independent rect. 22 1
228 162.28 atmosphere 1005.0 30 > th dose independent rect. 22 1
231 162.31 wind 1.0 30 > th dose independent rect. 22 1
234 162.33 temperature 10.0 30 > th dose independent rect. 22 1
236 162.33 temperature 30.0 30 < th dose independent rect. 22 1
237 162.33 humidity 50.0 30 > th dose independent rect. 22 1
240 162.33 atmosphere 995.0 30 > th dose independent rect. 22 1
241 162.33 atmosphere 1010.0 30 < th dose independent rect. 22 1
243 162.33 radiation 1.0 30 < th dose independent rect. 22 1
249 162.33 temperature 10.0 30 > th dose independent rect. 23 23
250 162.33 radiation 1.0 30 < th dose dependent rect. 22 1
255 162.33 temperature 20.0 720 > th dose dependent rect. 23 12
257 162.37 wind 9.0 30 < th dose dependent rect. 22 1
261 162.40 precipitation 0.1 30 < th dose independent rect. 22 1
262 162.40 precipitation 0.1 30 < th dose dependent rect. 22 1
264 162.41 humidity 50.0 30 > th dose dependent rect. 22 1
265 162.42 temperature 20.0 90 < th dose independent rect. 2 1
270 162.48 temperature 20.0 720 > th dose independent rect. 23 9
271 162.48 wind 1.0 30 > th dose dependent rect. 22 1
273 162.49 temperature 20.0 720 < th dose independent rect. 24 8
274 162.50 temperature 25.0 720 < th dose dependent rect. 24 4
282 162.59 atmosphere 1015.0 30 < th dose dependent rect. 22 1
285 162.62 temperature 25.0 720 < th dose dependent rect. 1 2
287 162.63 temperature 30.0 720 < th dose dependent rect. 24 9
296 162.69 temperature 10.0 720 > th dose dependent rect. 23 7
302 162.78 wind 7.0 43200 > th dose dependent rect. 9 1
314 162.90 atmosphere 995.0 43200 > th dose independent rect. 6 7
316 162.90 wind 9.0 43200 > th dose dependent rect. 16 17
326 162.93 wind 9.0 43200 > th dose independent rect. 18 16
333 162.98 wind 9.0 43200 < th dose independent rect. 18 16
334 162.98 atmosphere 995.0 43200 < th dose dependent sin 1 NA
336 162.98 atmosphere 995.0 43200 < th dose dependent rect. 4 12
355 163.04 wind 9.0 43200 > th dose dependent sin 11 NA
370 163.10 wind 9.0 30 < th dose independent rect. 23 23
376 163.11 wind 7.0 43200 > th dose independent rect. 6 3
379 163.13 wind 7.0 43200 < th dose independent rect. 6 3
422 163.25 atmosphere 995.0 43200 < th dose independent rect. 5 10
448 163.34 wind 9.0 43200 > th dose independent rect. 16 19
450 163.34 wind 9.0 43200 > th dose dependent rect. 20 13
470 163.41 wind 7.0 43200 < th dose independent rect. 6 1
473 163.41 wind 9.0 43200 > th dose dependent rect. 20 17
493 163.46 atmosphere 995.0 43200 > th dose independent rect. 5 10
494 163.46 wind 9.0 43200 > th dose independent rect. 20 14
511 163.49 wind 9.0 43200 < th dose independent rect. 9 1
513 163.49 humidity 80.0 1440 > th dose independent rect. 1 1
515 163.49 wind 9.0 43200 < th dose independent rect. 20 14
547 163.53 atmosphere 995.0 43200 < th dose dependent rect. 7 16
549 163.53 wind 9.0 43200 > th dose dependent rect. 6 21
556 163.54 wind 9.0 43200 > th dose dependent rect. 6 18
561 163.55 wind 9.0 43200 < th dose independent rect. 16 19
571 163.56 atmosphere 995.0 43200 > th dose independent rect. 7 1
577 163.56 wind 9.0 43200 > th dose dependent rect. 6 16
586 163.56 wind 9.0 43200 > th dose dependent rect. 18 23
589 163.57 temperature 15.0 720 > th dose dependent rect. 3 3
598 163.58 wind 9.0 43200 > th dose dependent no NA NA
608 163.58 wind 9.0 43200 > th dose dependent rect. 1 23
611 163.58 wind 9.0 43200 > th dose dependent rect. 23 23
615 163.59 atmosphere 995.0 43200 < th dose dependent rect. 7 10
625 163.59 wind 9.0 43200 > th dose dependent rect. 20 23
646 163.61 temperature 30.0 30 < th dose dependent rect. 22 1
658 163.62 wind 9.0 43200 > th dose independent sin 9 NA
663 163.62 humidity 80.0 43200 > th dose dependent rect. 7 2
691 163.64 wind 7.0 43200 > th dose dependent rect. 6 1
696 163.65 wind 9.0 43200 > th dose independent rect. 23 4
698 163.65 temperature 25.0 720 < th dose dependent rect. 3 1
763 163.70 wind 9.0 43200 > th dose dependent sin 2 NA
771 163.71 atmosphere 995.0 43200 < th dose independent sin 1 NA
774 163.71 atmosphere 995.0 43200 < th dose dependent rect. 5 4
781 163.72 wind 9.0 43200 > th dose independent rect. 9 1
789 163.72 atmosphere 995.0 43200 < th dose dependent rect. 4 7
795 163.73 atmosphere 995.0 43200 > th dose independent sin 1 NA
824 163.75 temperature 15.0 720 > th dose dependent rect. 1 5
835 163.76 wind 9.0 43200 < th dose independent rect. 6 6
839 163.76 wind 9.0 43200 > th dose dependent rect. 23 4
844 163.77 wind 9.0 43200 < th dose independent sin 9 NA
878 163.80 wind 9.0 43200 > th dose independent rect. 6 6
893 163.81 temperature 20.0 10 < th dose dependent rect. 2 8
905 163.82 temperature 20.0 720 > th dose dependent sin 8 NA
914 163.82 wind 7.0 43200 > th dose dependent rect. 1 10
938 163.84 atmosphere 995.0 43200 < th dose independent rect. 7 8
955 163.85 wind 7.0 43200 > th dose dependent rect. 22 13