BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0646900 Os02g0646900|Os02g0646900
         (218 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29720.1  | chr4:14553456-14555057 REVERSE LENGTH=534          105   2e-23
AT1G65840.1  | chr1:24490173-24492728 FORWARD LENGTH=498           52   2e-07
AT3G59050.1  | chr3:21824932-21827173 REVERSE LENGTH=489           47   7e-06
AT3G10390.1  | chr3:3229293-3232345 FORWARD LENGTH=885             47   8e-06

>AT4G29720.1 | chr4:14553456-14555057 REVERSE LENGTH=534
          Length = 533

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 79/115 (68%), Gaps = 3/115 (2%)

Query: 2   VAKKPRVVVVGAGISCLTAAHRLCGAGGDKFEVAVVEAGDRVDCRILTSEFAGHRVEMGA 61
           +AKK R+V++GAG++ LTAA++L  +  + FE++VVE G R+  RI TSEF+  ++EMGA
Sbjct: 1   MAKKARIVIIGAGMAGLTAANKLYTSSNNTFELSVVEGGSRIGGRINTSEFSSEKIEMGA 60

Query: 62  TWVQGVVGSPVYALARDAGAIGEEGGGLPYERMDGFPDRVLTVAEGGEVVDADTV 116
           TW+ G+ GSPVY +A++ G++  +    P+E MD   D+  T AEGG  ++   V
Sbjct: 61  TWIHGIGGSPVYRIAKETGSLVSDE---PWECMDSTIDKAKTFAEGGFEIEPSIV 112



>AT1G65840.1 | chr1:24490173-24492728 FORWARD LENGTH=498
          Length = 497

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 4/77 (5%)

Query: 5   KPRVVVVGAGISCLTAAHRLCGAGGDKFEVAVVEAGDRVDCRILTSEFAGHRVEMGATWV 64
           +P V+V+G+GIS L AA  L  A    F+V V+E+ DR+  RI T    G  V+MGA+W+
Sbjct: 28  QPSVIVIGSGISGLAAARNLSEAS---FKVTVLESRDRIGGRIHTDYSFGCPVDMGASWL 84

Query: 65  QGVVG-SPVYALARDAG 80
            GV   +P+  + R  G
Sbjct: 85  HGVSDENPLAPIIRRLG 101



>AT3G59050.1 | chr3:21824932-21827173 REVERSE LENGTH=489
          Length = 488

 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 12/94 (12%)

Query: 4   KKPRVVVVGAGISCLTAAHRLCGAGGDKFEVAVVEAGDRVDCRILTSEFAGHRVEMGATW 63
           + P V+V+G G++ ++AA  L  A    F+V V+E+ DR+  R+ T    G  V++GA+W
Sbjct: 27  RSPSVIVIGGGMAGISAARTLQDAS---FQVVVLESRDRIGGRVHTDYSFGFPVDLGASW 83

Query: 64  VQGVVG-SPVYALARDAGAIGEEGGGLPYERMDG 96
           + GV   +P+      A  IG    GLP  R  G
Sbjct: 84  LHGVCKENPL------AAVIGRL--GLPLYRTSG 109



>AT3G10390.1 | chr3:3229293-3232345 FORWARD LENGTH=885
          Length = 884

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 8/101 (7%)

Query: 3   AKKPRVVVVGAGISCLTAAHRLCGAGGDKFEVAVVEAGDRVDCRILTSEFAGHRV----E 58
           + K  V++VGAG+S L AA +L   G   F+V V+E   R   R+ T +   +RV    +
Sbjct: 182 SSKSSVIIVGAGLSGLAAARQLMRFG---FKVTVLEGRKRPGGRVYTKKMEANRVGAAAD 238

Query: 59  MGATWVQGVVGSPVYALARDAG-AIGEEGGGLPYERMDGFP 98
           +G + + G +G+P+  +AR  G ++ +     P  R+DG P
Sbjct: 239 LGGSVLTGTLGNPLGIIARQLGSSLYKVRDKCPLYRVDGKP 279



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,675,991
Number of extensions: 133497
Number of successful extensions: 247
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 6
Length of query: 218
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 123
Effective length of database: 8,502,049
Effective search space: 1045752027
Effective search space used: 1045752027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)