Os02g0641800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA helicase (Fragment).
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Os02g0641800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA helicase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.38 | 0.217 | 11.3 | 0.122 | 0.531 | -0.335 | 0.306 | -0.25 | 0.149 | 11.9 | 42.29 | 4640 | -- | -- |
| 21.48 | 0.216 | 11.3 | 0.103 | 0.532 | -0.341 | 0.329 | -- | 0.146 | 11.9 | 42.28 | 4657 | -- | -- |
| 21.79 | 0.217 | 11.3 | 0.125 | 0.531 | -0.328 | -- | -0.279 | 0.152 | 11.9 | 42.27 | 4640 | -- | -- |
| 21.92 | 0.218 | 11.3 | 0.107 | 0.53 | -0.332 | -- | -- | 0.141 | 11.9 | 42.23 | 4640 | -- | -- |
| 39.31 | 0.292 | 11.3 | 0.117 | -- | -0.376 | -- | -0.0908 | 0.159 | -- | 42.15 | 4637 | -- | -- |
| 24.38 | 0.231 | 11.3 | 0.0803 | 0.551 | -- | 0.27 | -- | 0.193 | 12 | -- | -- | -- | -- |
| 24.7 | 0.233 | 11.3 | 0.0911 | 0.55 | -- | -- | -- | 0.194 | 12 | -- | -- | -- | -- |
| 39.24 | 0.292 | 11.3 | 0.0775 | -- | -0.398 | -- | -- | 0.137 | -- | 41.84 | 4640 | -- | -- |
| 22.21 | 0.219 | 11.3 | -- | 0.525 | -0.339 | -- | -- | 0.132 | 11.9 | 41.37 | 4640 | -- | -- |
| 43.73 | 0.309 | 11.3 | 0.0741 | -- | -- | -- | -- | 0.187 | -- | -- | -- | -- | -- |
| 24.92 | 0.234 | 11.3 | -- | 0.549 | -- | -- | -- | 0.184 | 12 | -- | -- | -- | -- |
| 39.46 | 0.293 | 11.3 | -- | -- | -0.407 | -- | -- | 0.129 | -- | 41.85 | 4640 | -- | -- |
| 43.88 | 0.309 | 11.3 | -- | -- | -- | -- | -- | 0.179 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.99 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 3 | 21.03 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 1 |
| 4 | 21.07 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 6 | 21.10 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 21 | 21.21 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 35 | 21.31 | wind | 7 | 720 | < th | dose independent | rect. | 17 | 1 |
| 38 | 21.33 | radiation | 10 | 30 | < th | dose dependent | rect. | 6 | 23 |
| 39 | 21.34 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 1 |
| 43 | 21.38 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 12 |
| 66 | 21.44 | humidity | 80 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 67 | 21.44 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 72 | 21.48 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 76 | 21.49 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 13 |
| 77 | 21.49 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 15 |
| 79 | 21.50 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 95 | 21.53 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 96 | 21.54 | humidity | 80 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 99 | 21.54 | radiation | 10 | 90 | < th | dose independent | rect. | 7 | 21 |
| 102 | 21.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 103 | 21.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 5 |
| 131 | 21.57 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 139 | 21.58 | temperature | 10 | 90 | > th | dose dependent | rect. | 4 | 13 |
| 145 | 21.60 | temperature | 25 | 720 | > th | dose independent | sin | 14 | NA |
| 149 | 21.60 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 154 | 21.61 | humidity | 60 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 155 | 21.61 | humidity | 80 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 159 | 21.62 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 161 | 21.62 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 178 | 21.62 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 212 | 21.64 | humidity | 80 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 216 | 21.64 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 240 | 21.65 | radiation | 1 | 30 | < th | dose independent | rect. | 17 | 12 |
| 248 | 21.65 | humidity | 70 | 14400 | < th | dose dependent | sin | 13 | NA |
| 249 | 21.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 258 | 21.66 | humidity | 70 | 14400 | < th | dose independent | sin | 11 | NA |
| 260 | 21.66 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 261 | 21.66 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 288 | 21.67 | wind | 5 | 90 | < th | dose independent | rect. | 17 | 11 |
| 300 | 21.67 | temperature | 10 | 30 | > th | dose dependent | rect. | 18 | 11 |
| 307 | 21.68 | humidity | 60 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 361 | 21.70 | humidity | 70 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 374 | 21.71 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 426 | 21.73 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 427 | 21.73 | humidity | 80 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 455 | 21.73 | radiation | 1 | 30 | < th | dose dependent | rect. | 17 | 12 |
| 458 | 21.74 | humidity | 70 | 14400 | > th | dose independent | sin | 11 | NA |
| 489 | 21.74 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 500 | 21.74 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 15 |
| 503 | 21.75 | humidity | 60 | 14400 | < th | dose independent | sin | 14 | NA |
| 506 | 21.75 | humidity | 80 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 547 | 21.76 | humidity | 60 | 14400 | > th | dose independent | sin | 15 | NA |
| 574 | 21.76 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 8 |
| 589 | 21.77 | humidity | 80 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 613 | 21.77 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 6 |
| 630 | 21.77 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 19 |
| 669 | 21.78 | radiation | 10 | 4320 | < th | dose dependent | rect. | 6 | 5 |
| 708 | 21.79 | radiation | 10 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 747 | 21.80 | radiation | 40 | 4320 | < th | dose independent | rect. | 13 | 22 |
| 783 | 21.81 | wind | 5 | 90 | < th | dose independent | rect. | 15 | 13 |
| 823 | 21.82 | wind | 7 | 720 | < th | dose independent | rect. | 15 | 4 |
| 844 | 21.82 | radiation | 30 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 865 | 21.83 | radiation | 10 | 720 | < th | dose independent | rect. | 17 | 1 |
| 942 | 21.85 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 945 | 21.85 | temperature | 25 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 957 | 21.85 | temperature | 25 | 4320 | > th | dose dependent | sin | 12 | NA |
| 962 | 21.85 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 988 | 21.86 | temperature | 30 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 989 | 21.86 | radiation | 40 | 270 | > th | dose independent | rect. | 12 | 3 |
| 994 | 21.86 | temperature | 25 | 14400 | > th | dose independent | rect. | 5 | 6 |