FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0634600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.0366) R2 : 0.117
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.705 (0.0936) R2dC : 0.11 R2C : 0.106
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.167 (0.0772) R2dN8 : 0.0118 R2N8 : 0.00733
σ : 0.692
deviance : 218.61
__
_____
C
peak time of C : 15.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
200.09 0.665 3.45 0.202 0.436 -0.66 0.743 -0.0051 0.193 16.2 29.5 139 -- --
200.01 0.659 3.46 0.199 0.417 -0.658 0.759 -- 0.176 16.2 29.4 160 -- --
201.36 0.661 3.44 0.233 0.432 -0.659 -- -0.399 0.198 15.7 29.5 138 -- --
201.35 0.661 3.45 0.2 0.414 -0.72 -- -- 0.199 15.7 29.51 161 -- --
206.95 0.67 3.45 0.18 -- -0.842 -- -0.239 0.144 -- 29 166 -- --
212.96 0.684 3.45 0.304 0.707 -- 1.07 -- 0.197 16.2 -- -- -- --
215.99 0.688 3.45 0.315 0.711 -- -- -- 0.203 15.9 -- -- -- --
207.04 0.67 3.46 0.15 -- -0.856 -- -- 0.136 -- 29.1 166 -- --
202.39 0.663 3.45 -- 0.404 -0.744 -- -- 0.178 15.6 29.6 165 -- --
243.7 0.729 3.45 0.286 -- -- -- -- 0.184 -- -- -- -- --
218.61 0.692 3.46 -- 0.705 -- -- -- 0.167 15.9 -- -- -- --
207.63 0.671 3.46 -- -- -0.857 -- -- 0.122 -- 29.1 166 -- --
245.86 0.732 3.45 -- -- -- -- -- 0.152 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 195.52 temperature 30 90 < th dose independent rect. 3 22
2 195.75 radiation 10 10 < th dose independent rect. 12 1
33 200.56 wind 1 10 < th dose dependent rect. 2 1
39 201.08 temperature 30 90 < th dose independent rect. 3 12
41 201.14 wind 1 10 < th dose independent rect. 1 2
46 201.26 temperature 30 90 < th dose independent sin 0 NA
49 201.36 temperature 30 270 < th dose independent rect. 10 12
51 201.40 temperature 15 270 > th dose dependent rect. 9 9
54 201.47 temperature 30 90 < th dose independent rect. 7 17
64 201.71 temperature 30 720 < th dose independent rect. 2 8
67 201.79 temperature 30 90 > th dose independent rect. 11 23
81 201.94 temperature 30 270 < th dose independent rect. 15 7
82 201.97 temperature 30 270 < th dose independent rect. 13 9
86 202.00 temperature 30 90 < th dose independent no NA NA
92 202.06 temperature 30 90 > th dose independent sin 23 NA
105 202.17 temperature 30 270 < th dose independent rect. 13 23
109 202.19 temperature 25 270 > th dose dependent sin 1 NA
121 202.24 temperature 25 270 > th dose dependent rect. 23 18
126 202.28 temperature 30 90 < th dose independent rect. 16 23
129 202.29 temperature 30 90 < th dose independent rect. 13 11
131 202.29 temperature 30 270 < th dose independent rect. 10 23
137 202.33 atmosphere 1005 10 > th dose dependent rect. 24 3
142 202.35 temperature 30 30 > th dose independent rect. 9 9
163 202.37 temperature 30 90 > th dose independent no NA NA
164 202.37 temperature 30 720 > th dose independent rect. 9 1
297 202.44 temperature 25 270 > th dose dependent rect. 6 11
310 202.48 temperature 30 90 < th dose independent rect. 20 23
314 202.49 temperature 30 10 < th dose independent rect. 4 10
334 202.51 temperature 15 90 > th dose dependent sin 20 NA
385 202.61 radiation 1 30 < th dose independent rect. 15 9
393 202.62 humidity 50 90 > th dose dependent rect. 3 21
413 202.69 temperature 15 270 > th dose dependent sin 22 NA
428 202.73 atmosphere 995 90 > th dose independent rect. 3 22
431 202.74 radiation 1 30 < th dose independent rect. 6 18
440 202.77 temperature 25 90 > th dose dependent sin 21 NA
445 202.78 temperature 15 270 > th dose dependent rect. 9 16
452 202.83 radiation 1 30 < th dose independent rect. 11 13
465 202.87 temperature 30 90 < th dose independent rect. 7 23
466 202.88 humidity 70 90 > th dose independent rect. 17 7
483 202.89 temperature 30 90 < th dose dependent rect. 11 12
486 202.90 temperature 30 10 < th dose dependent rect. 11 13
524 202.96 radiation 1 10 < th dose dependent rect. 16 8
653 203.05 radiation 10 90 < th dose dependent rect. 13 11
667 203.07 radiation 1 10 < th dose dependent rect. 6 18
676 203.10 radiation 1 10 < th dose dependent rect. 4 21
677 203.10 temperature 25 90 > th dose dependent rect. 9 22
719 203.15 radiation 10 10 < th dose independent rect. 10 3
720 203.15 temperature 30 30 < th dose independent rect. 8 11
738 203.18 radiation 1 10 < th dose dependent rect. 11 13
767 203.24 humidity 70 10 > th dose independent rect. 18 6
772 203.24 temperature 25 90 > th dose dependent rect. 9 19
780 203.25 temperature 25 90 > th dose dependent rect. 9 16
786 203.26 radiation 1 10 < th dose independent rect. 4 21
790 203.27 temperature 30 10 > th dose independent rect. 13 22
795 203.27 temperature 25 270 > th dose dependent rect. 17 23
834 203.35 radiation 1 90 < th dose independent rect. 3 22
972 203.40 wind 9 30 > th dose dependent rect. 11 1
998 203.46 humidity 70 90 > th dose independent rect. 3 21