BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0634600 Os02g0634600|AK101737
         (405 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23200.1  | chr5:7807319-7808988 FORWARD LENGTH=400            508   e-144
AT5G08270.1  | chr5:2661747-2663482 FORWARD LENGTH=387            414   e-116

>AT5G23200.1 | chr5:7807319-7808988 FORWARD LENGTH=400
          Length = 399

 Score =  508 bits (1307), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 253/414 (61%), Positives = 308/414 (74%), Gaps = 24/414 (5%)

Query: 1   MGSLFIRFQEAVKTLAKNPMFANNRLFARDPRHLQFEADVNRLFLYTSYYRLGANAEEKD 60
           M +LF +FQ+AV  LAK+  FA N      PR LQFEADVN+LF+YTSY RLG  AEE D
Sbjct: 1   MATLFNKFQQAVGVLAKSTTFAKN------PRQLQFEADVNKLFMYTSYNRLGREAEETD 54

Query: 61  AEEIIDMASKASVSEQQKQVQENVHYQLTNMCQAMDSILLPDTKNGASEANNY----PRR 116
           AEEII+MA KA++SEQQKQVQEN+HYQ+   C  MD ILLPD +   S + +     PRR
Sbjct: 55  AEEIIEMAGKATLSEQQKQVQENIHYQVEKFCSLMDGILLPDVRRNESGSQSTSPRPPRR 114

Query: 117 SGLSFAVGTGVA--SANKPDVPSTRPLNRAELSNKFRDHFQYTLDIRPSQIPHKDAGQGL 174
           SGL+FA+G+  A   A++P VP T+PL   ++S +  D   YTL+ +PS IPHKDAGQG 
Sbjct: 115 SGLTFAIGSNNAFPHADQPLVPETKPLKLNDVSQRLMDQMGYTLETKPSVIPHKDAGQGC 174

Query: 175 FLSGETNAGAVLAIYPGVVYSPAYYRYIPGYPKIDACNNYLITRYDGTIIDAKPWQLGGD 234
           F+ GE + G VLA YPGV+YSPA+Y+YIPGYPK+D+ N+YLITRYDGT+I+A+PW LGG+
Sbjct: 175 FIKGEADVGTVLAFYPGVIYSPAFYKYIPGYPKVDSQNSYLITRYDGTVINAQPWGLGGE 234

Query: 235 SREIWDGSDLVDYNAVPSKSQESNSDRAWRMLSKPLK---KGHTENFGEVLERRNPLAFG 291
           SRE W+GS      A  +K+ E+ SDR W+ LSKPL+   KG      EVLERRNPLAFG
Sbjct: 235 SREAWNGSYTPAVKA-NTKTAENGSDRLWKALSKPLEGSGKGK-----EVLERRNPLAFG 288

Query: 292 HFANHPPKGSTPNVMICPYDFPLTEKDMRVYIPNITFGGEEEPVTMKRFGSFWFKSGRSG 351
           H ANHP K  TPNVMICPYDFPL  KD+R YIPNI+FG   E + MKRFGSFWFK+G   
Sbjct: 289 HLANHPAKEMTPNVMICPYDFPLMAKDLRPYIPNISFGDSGE-IKMKRFGSFWFKTGSKN 347

Query: 352 NQEGESPVLKTLVLVSTRSICDEELFLNYRYSNSKKRPEWYIPVDEEEDKRRWS 405
               E+PVLKTLVLV+TRS+C+EEL LNYR SNSK+RP+WY PV+EEED+RRWS
Sbjct: 348 GL--EAPVLKTLVLVATRSLCNEELLLNYRLSNSKRRPDWYTPVNEEEDRRRWS 399



>AT5G08270.1 | chr5:2661747-2663482 FORWARD LENGTH=387
          Length = 386

 Score =  414 bits (1063), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/400 (55%), Positives = 282/400 (70%), Gaps = 22/400 (5%)

Query: 1   MGSLFIRFQEAVKTLAKNPMFANNRLFARDPRHLQFEADVNRLFLYTSYYRLGANAEEKD 60
           M  LF +FQ+ V  LAK+  FA N      PR LQFEAD+N+LF++TSY RLG +AEE D
Sbjct: 6   MMFLFGKFQQGVGVLAKSTTFAKN------PRQLQFEADINKLFMFTSYNRLGRDAEEAD 59

Query: 61  AEEIIDMASKASVSEQQKQVQENVHYQLTNMCQAMDSILLP--DTKNGASEANNYPRRSG 118
           AEEII+MA KA+ SEQQKQVQEN+HYQL N C +M+ ILL   D     +E  +  RR  
Sbjct: 60  AEEIIEMAGKATFSEQQKQVQENIHYQLQNFCSSMNEILLTNIDKTKDLNEPGSESRRDN 119

Query: 119 LSFAVGTGVASANKPDVPSTRPLNRAELSNKFRDHFQYTLDIRPSQIPHKDAGQGLFLSG 178
           +       V +A+KP VP T+PL   E+S++ +D   YTL+I+PS IPHKDAGQG F+ G
Sbjct: 120 I-------VPAADKPIVPETKPLKLDEVSHRLKDRVGYTLEIKPSLIPHKDAGQGCFIEG 172

Query: 179 ETNAGAVLAIYPGVVYSPAYYRYIPGYPKIDACNNYLITRYDGTIIDAKPWQLGGDSREI 238
           E + GAVLA YPGV+YSPA++RYIPGYP +DA N+YLIT YDGT+I+A+PW  GG SRE+
Sbjct: 173 EADVGAVLAFYPGVIYSPAFHRYIPGYPNVDAQNSYLITGYDGTVINAQPWGRGGISREV 232

Query: 239 WDGSDLVDYNAVPSKSQESNSDRAWRMLSKPLK-KGHTENFGEVLERRNPLAFGHFANHP 297
           W+GS         + + E++SD+ W+MLS+PL+  G  E    V+E RNPLAFGHF NHP
Sbjct: 233 WNGSFTTPEIRTEATTTENSSDKVWKMLSRPLEGSGGVE---AVIEMRNPLAFGHFINHP 289

Query: 298 PKGSTPNVMICPYDFPLTEKDMRVYIPNITFGGEEEPVTMKRFGSFWFKSGRSGNQEGES 357
            K    NVMICPYDF L+E +MR YIPN+ FG   + V M RF SF  ++G   N   ++
Sbjct: 290 GKEMESNVMICPYDFLLSETEMRAYIPNVAFGNTGD-VKMGRFESFLSRTG--SNSSLDA 346

Query: 358 PVLKTLVLVSTRSICDEELFLNYRYSNSKKRPEWYIPVDE 397
            VLKT+VLV+T+++C+EEL LNYR SNS+KR EWYIP+DE
Sbjct: 347 HVLKTIVLVATKALCNEELMLNYRLSNSEKRLEWYIPLDE 386



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,712,299
Number of extensions: 453213
Number of successful extensions: 1014
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1004
Number of HSP's successfully gapped: 2
Length of query: 405
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 304
Effective length of database: 8,337,553
Effective search space: 2534616112
Effective search space used: 2534616112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)