Os02g0621700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, beta chain) (SCS-beta).
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Os02g0621700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, beta chain) (SCS-beta).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.97 | 0.23 | 11.1 | -0.612 | 0.0687 | -0.418 | -0.168 | -0.374 | -0.438 | 4.58 | 21.77 | 867 | -- | -- |
| 24.35 | 0.23 | 11.1 | -0.506 | 0.0498 | -0.41 | -0.242 | -- | -0.411 | 2.9 | 21.8 | 858 | -- | -- |
| 24.01 | 0.228 | 11.1 | -0.614 | 0.0759 | -0.409 | -- | -0.38 | -0.438 | 5.93 | 21.8 | 912 | -- | -- |
| 24.42 | 0.23 | 11.1 | -0.506 | 0.0731 | -0.395 | -- | -- | -0.416 | 5.78 | 21.8 | 864 | -- | -- |
| 24.29 | 0.23 | 11.1 | -0.608 | -- | -0.416 | -- | -0.37 | -0.436 | -- | 21.8 | 862 | -- | -- |
| 30.08 | 0.257 | 11.1 | -0.662 | 0.118 | -- | 0.24 | -- | -0.534 | 8.8 | -- | -- | -- | -- |
| 30.25 | 0.258 | 11.1 | -0.655 | 0.121 | -- | -- | -- | -0.535 | 8.15 | -- | -- | -- | -- |
| 24.66 | 0.231 | 11.1 | -0.511 | -- | -0.394 | -- | -- | -0.413 | -- | 21.8 | 759 | -- | -- |
| 29.66 | 0.254 | 11 | -- | 0.0703 | -0.57 | -- | -- | -0.31 | 4.57 | 21.6 | 2195 | -- | -- |
| 31.05 | 0.26 | 11.1 | -0.654 | -- | -- | -- | -- | -0.533 | -- | -- | -- | -- | -- |
| 41.55 | 0.302 | 11.1 | -- | 0.118 | -- | -- | -- | -0.462 | 8.55 | -- | -- | -- | -- |
| 29.87 | 0.255 | 11 | -- | -- | -0.585 | -- | -- | -0.31 | -- | 21.6 | 2177 | -- | -- |
| 42.33 | 0.304 | 11.1 | -- | -- | -- | -- | -- | -0.461 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.65 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 2 | 22.98 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 3 | 23.02 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 7 | 23.98 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 13 | 24.08 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 14 | 24.14 | wind | 1.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 15 | 24.19 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 16 | 24.22 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 17 | 24.23 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 20 | 24.27 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 21 | 24.28 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 34 | 24.34 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 45 | 24.41 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 49 | 24.42 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 51 | 24.43 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 52 | 24.43 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 20 |
| 57 | 24.44 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 66 | 24.47 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 83 | 24.50 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 90 | 24.51 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 92 | 24.52 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 125 | 24.57 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 150 | 24.61 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 177 | 24.66 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 187 | 24.67 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 210 | 24.70 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 227 | 24.72 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 242 | 24.74 | temperature | 25.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 276 | 24.77 | temperature | 20.0 | 720 | > th | dose independent | rect. | 7 | 21 |
| 310 | 24.80 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 413 | 24.91 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 425 | 24.92 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 12 |
| 436 | 24.94 | wind | 1.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 453 | 24.95 | wind | 1.0 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 469 | 24.96 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 19 |
| 481 | 24.97 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 508 | 24.99 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 529 | 25.01 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 20 |
| 577 | 25.04 | wind | 1.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 578 | 25.04 | wind | 1.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 579 | 25.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 626 | 25.07 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 641 | 25.08 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 645 | 25.08 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 680 | 25.11 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 9 | 6 |
| 755 | 25.15 | wind | 1.0 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 765 | 25.15 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 812 | 25.18 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 9 | 6 |
| 813 | 25.18 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 11 |
| 819 | 25.18 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 928 | 25.24 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 950 | 25.25 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 956 | 25.26 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 996 | 25.30 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 4 |