BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0621700 Os02g0621700|AK101006
         (422 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20420.1  | chr2:8805574-8807858 FORWARD LENGTH=422            745   0.0  

>AT2G20420.1 | chr2:8805574-8807858 FORWARD LENGTH=422
          Length = 421

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/418 (85%), Positives = 394/418 (94%)

Query: 2   VRGSLGKLASRALSVAGKWQHQQLRRLNIHEYQGAELMGKYGINVPRGAAAGSVEEVKNT 61
           +RG + KL SR+LS++GKWQ+QQLRRLNIHEYQGAELMGKYG+NVP+G AA S+EEVK  
Sbjct: 1   MRGLVNKLVSRSLSISGKWQNQQLRRLNIHEYQGAELMGKYGVNVPKGVAASSLEEVKKA 60

Query: 62  LKNVFPSEKEIVVKSQILAGGRGLGTFKSGLQGGVHIVKAEEAESLAAKMLGQILVTKQT 121
           +++VFP+E E+VVKSQILAGGRGLGTFKSGL+GGVHIVK +EAE +A KMLGQ+LVTKQT
Sbjct: 61  IQDVFPNESELVVKSQILAGGRGLGTFKSGLKGGVHIVKRDEAEEIAGKMLGQVLVTKQT 120

Query: 122 GPQGKIVSKVYLCEKLSLVNEMYFAITLDRNTAGPLIIACSKGGTSIEDLAEKYPDMIIK 181
           GPQGK+VSKVYLCEKLSLVNEMYF+I LDR +AGPLIIAC KGGTSIEDLAEK+PDMIIK
Sbjct: 121 GPQGKVVSKVYLCEKLSLVNEMYFSIILDRKSAGPLIIACKKGGTSIEDLAEKFPDMIIK 180

Query: 182 VPIDVFKGITDDDAAKVVDGLAPKTADRQSSIEQIKKLYELFCKSDCTLLEINPLAETAD 241
           VPIDVF GITD+DAAKVVDGLAPK ADR+ SIEQ+KKLYELF K+DCT+LEINPLAET+ 
Sbjct: 181 VPIDVFAGITDEDAAKVVDGLAPKAADRKDSIEQVKKLYELFRKTDCTMLEINPLAETST 240

Query: 242 NKLVAADAKLNFDDNAAFRQKEIFAMRDTTQEDPREVAAAKADLNYIGLDGEIGCMVNGA 301
           N+LVAADAKLNFDDNAAFRQKE+FAMRD TQEDPREVAAAK DLNYIGLDGEIGCMVNGA
Sbjct: 241 NQLVAADAKLNFDDNAAFRQKEVFAMRDPTQEDPREVAAAKVDLNYIGLDGEIGCMVNGA 300

Query: 302 GLAMATMDIIKLHGGTPANFLDVGGSASEGQVVEAFKILTSDDRVKAILVNIFGGIMKCD 361
           GLAMATMDIIKLHGGTPANFLDVGG+ASE QVVEAFKILTSDD+VKAILVNIFGGIMKCD
Sbjct: 301 GLAMATMDIIKLHGGTPANFLDVGGNASEHQVVEAFKILTSDDKVKAILVNIFGGIMKCD 360

Query: 362 VIASGIVNAAKQVDLKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKA 419
           VIASGIVNAAK+V LKVPVVVRLEGTNV+QGKRILKESGM LITA+DLDDAAEKAVKA
Sbjct: 361 VIASGIVNAAKEVALKVPVVVRLEGTNVEQGKRILKESGMKLITADDLDDAAEKAVKA 418



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.134    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,319,264
Number of extensions: 345092
Number of successful extensions: 962
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 962
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 321
Effective length of database: 8,337,553
Effective search space: 2676354513
Effective search space used: 2676354513
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)