Os02g0620100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mis12 family protein.
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Os02g0620100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mis12 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.3 | 0.298 | 10.3 | 0.814 | 0.516 | -0.772 | 0.25 | 1.44 | 0.0825 | 11.8 | 20.4 | 1483 | -- | -- |
| 43.71 | 0.308 | 10.3 | 0.546 | 0.504 | -1.06 | 0.274 | -- | 0.00852 | 11.7 | 19.6 | 1491 | -- | -- |
| 40.54 | 0.297 | 10.3 | 0.822 | 0.52 | -0.771 | -- | 1.44 | 0.0854 | 11.8 | 20.4 | 1512 | -- | -- |
| 43.71 | 0.308 | 10.3 | 0.606 | 0.519 | -1.12 | -- | -- | 0.0264 | 11.8 | 19.61 | 1514 | -- | -- |
| 56.11 | 0.349 | 10.3 | 0.868 | -- | -0.726 | -- | 1.56 | 0.103 | -- | 20.82 | 1242 | -- | -- |
| 64.01 | 0.375 | 10.4 | 0.16 | 0.526 | -- | 0.24 | -- | -0.186 | 12 | -- | -- | -- | -- |
| 64.26 | 0.375 | 10.4 | 0.169 | 0.525 | -- | -- | -- | -0.185 | 12 | -- | -- | -- | -- |
| 58.11 | 0.355 | 10.3 | 0.584 | -- | -1.1 | -- | -- | -0.0111 | -- | 19.4 | 780 | -- | -- |
| 48.89 | 0.327 | 10.3 | -- | 0.659 | -0.61 | -- | -- | -0.107 | 12.2 | 20.2 | 1489 | -- | -- |
| 81.61 | 0.422 | 10.4 | 0.153 | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
| 65.02 | 0.377 | 10.4 | -- | 0.523 | -- | -- | -- | -0.204 | 12 | -- | -- | -- | -- |
| 64.38 | 0.374 | 10.4 | -- | -- | -0.818 | -- | -- | -0.0928 | -- | 19.61 | 729 | -- | -- |
| 82.23 | 0.423 | 10.4 | -- | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.38 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 2 | 39.61 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 23 |
| 3 | 39.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 7 | 39.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 11 | 39.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 12 | 39.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 30 | 40.11 | temperature | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 59 | 40.23 | temperature | 20 | 1440 | > th | dose independent | sin | 4 | NA |
| 92 | 40.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 104 | 40.35 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 23 |
| 111 | 40.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 129 | 40.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 150 | 40.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 152 | 40.48 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 159 | 40.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 165 | 40.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 166 | 40.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 173 | 40.53 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 176 | 40.54 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 183 | 40.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 190 | 40.57 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 191 | 40.57 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 195 | 40.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 200 | 40.58 | temperature | 20 | 270 | < th | dose independent | rect. | 13 | 23 |
| 208 | 40.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 209 | 40.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 239 | 40.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 264 | 40.71 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 23 |
| 443 | 41.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 9 |
| 458 | 41.36 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 487 | 41.46 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 492 | 41.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 9 |
| 589 | 41.73 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 23 |
| 680 | 42.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 10 |
| 757 | 42.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 5 |
| 771 | 42.39 | temperature | 25 | 1440 | < th | dose dependent | sin | 5 | NA |
| 906 | 42.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 951 | 42.78 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 23 |
| 983 | 42.83 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 5 |