BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0620100 Os02g0620100|AK061245
         (238 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35520.1  | chr5:13701396-13702925 FORWARD LENGTH=239           70   1e-12

>AT5G35520.1 | chr5:13701396-13702925 FORWARD LENGTH=239
          Length = 238

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 54/98 (55%)

Query: 1  MEESDETAVEAALGLSASFFVNSVLNAVDDVRYGAFEYCLQEGAPEAVGAAMATQKAEEL 60
          ME S   AV  ++ L+   F+N  +N+V+D    AF++  ++ +          QK++ L
Sbjct: 1  MEGSKSEAVFDSMNLNPQIFINEAINSVEDYVDQAFDFYARDASKSLKIKGSDKQKSQAL 60

Query: 61 ERGVISIHNLVKDVLDKRMSNWEKYCLRHCFAIPEGFL 98
            G+  +  L+  V+D R+  WE Y LR CFA+P+GF+
Sbjct: 61 SNGIARVRGLLLSVIDNRLKLWESYSLRFCFAVPDGFV 98



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,391,132
Number of extensions: 160344
Number of successful extensions: 366
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 142
Effective length of database: 8,474,633
Effective search space: 1203397886
Effective search space used: 1203397886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)