Os02g0613400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prefoldin domain containing protein.
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Os02g0613400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prefoldin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.09 | 0.235 | 11 | 0.729 | 0.869 | -0.386 | -0.0404 | 2.48 | 0.0794 | 10.4 | 18.54 | 3040 | -- | -- |
| 30.4 | 0.257 | 11.1 | 0.32 | 0.876 | -0.518 | -0.0731 | -- | 0.000133 | 10.3 | 11.39 | 22781 | -- | -- |
| 25.09 | 0.233 | 11 | 0.741 | 0.87 | -0.388 | -- | 2.51 | 0.0828 | 10.4 | 18.34 | 3048 | -- | -- |
| 29.59 | 0.253 | 11.1 | 0.181 | 0.872 | -0.507 | -- | -- | -0.0397 | 10.3 | 12.29 | 9955 | -- | -- |
| 66.28 | 0.379 | 11 | 0.942 | -- | -0.776 | -- | 3.27 | 0.145 | -- | 23.62 | 2301 | -- | -- |
| 33.83 | 0.273 | 11.1 | -0.122 | 0.885 | -- | -0.0447 | -- | -0.19 | 10.4 | -- | -- | -- | -- |
| 33.84 | 0.272 | 11.1 | -0.124 | 0.885 | -- | -- | -- | -0.19 | 10.4 | -- | -- | -- | -- |
| 75.04 | 0.403 | 11.1 | 0.185 | -- | -0.601 | -- | -- | -0.0184 | -- | 12.9 | 9516 | -- | -- |
| 30.04 | 0.255 | 11.1 | -- | 0.872 | -0.422 | -- | -- | -0.075 | 10.4 | 10.3 | 9169 | -- | -- |
| 81.74 | 0.422 | 11.2 | -0.139 | -- | -- | -- | -- | -0.193 | -- | -- | -- | -- | -- |
| 34.24 | 0.274 | 11.1 | -- | 0.886 | -- | -- | -- | -0.177 | 10.4 | -- | -- | -- | -- |
| 75.73 | 0.405 | 11.1 | -- | -- | -0.531 | -- | -- | -0.0779 | -- | 10.45 | 6631 | -- | -- |
| 82.25 | 0.423 | 11.2 | -- | -- | -- | -- | -- | -0.178 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.96 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 2 | 23.13 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 3 | 23.13 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 18 |
| 23 | 23.23 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 19 |
| 24 | 23.24 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 25 | 23.25 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 34 | 23.26 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 35 | 23.26 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 14 |
| 53 | 23.29 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 68 | 23.31 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 73 | 23.32 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 105 | 23.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 165 | 23.40 | humidity | 90 | 14400 | > th | dose dependent | sin | 6 | NA |
| 182 | 23.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 198 | 23.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 214 | 23.45 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 227 | 23.46 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 302 | 23.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 319 | 23.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 332 | 23.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 383 | 23.74 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 389 | 23.75 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 420 | 23.80 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 423 | 23.81 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 434 | 23.83 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 457 | 23.86 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 466 | 23.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 472 | 23.89 | humidity | 90 | 14400 | < th | dose independent | sin | 12 | NA |
| 478 | 23.89 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 525 | 23.94 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 579 | 24.03 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 603 | 24.06 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 671 | 24.14 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 681 | 24.16 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 728 | 24.21 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 757 | 24.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 771 | 24.26 | radiation | 10 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 828 | 24.35 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 861 | 24.40 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 863 | 24.40 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 872 | 24.41 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 907 | 24.45 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 923 | 24.47 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 934 | 24.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 953 | 24.51 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 7 |
| 965 | 24.52 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 966 | 24.52 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 971 | 24.53 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 991 | 24.55 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |