BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0613400 Os02g0613400|AK108796
         (290 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25320.1  | chr2:10781951-10788065 REVERSE LENGTH=1674         353   7e-98

>AT2G25320.1 | chr2:10781951-10788065 REVERSE LENGTH=1674
          Length = 1673

 Score =  353 bits (905), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 180/291 (61%), Positives = 230/291 (79%), Gaps = 13/291 (4%)

Query: 2    QQLTESEAANAHLRSELKAEKDRFVREKKELSEQMLEMENQLEWVRSEKDEQIVKLTADK 61
            Q+L+ESEAAN  L+SE+KAE DRF REKK+L EQ  ++E+QLEW+RSE+ ++I KL+++K
Sbjct: 1389 QKLSESEAANTRLKSEMKAEADRFSREKKDLVEQFRDVESQLEWIRSERQDEIDKLSSEK 1448

Query: 62   KNLHDRLHEAETQLSQFKAWKREELKKITKEKNALAERLKGVEASRKRVDDEFKRFVAEA 121
            K L DRLHEAETQL+  K  KR+ELKK+ KEKNAL E+LK  EA+RKR ++E KR+  E 
Sbjct: 1449 KTLLDRLHEAETQLALQKTRKRDELKKVGKEKNALTEKLKVTEAARKRFEEELKRYATEN 1508

Query: 122  QTREEIRKSLEGEVRRLTQTVGQTEGEKKEKEDQITRCEAYIDGMESKLQVCQQYIHTLE 181
             TREE+RKSLE ++R+LTQTVGQT+ EK+EKEDQI RCEAYIDGMESKLQ CQQYIHTLE
Sbjct: 1509 VTREELRKSLEDQIRQLTQTVGQTKEEKREKEDQIARCEAYIDGMESKLQACQQYIHTLE 1568

Query: 182  TSIQEEMARHAPVYGVGVEALSLDELETLTNIHERGLRQIHAIRQRKGSSHRLSAPSLPH 241
            +S++EE++RHAP+YG  +E+LS+ EL+T+  IHE GLRQIHA++QRKG  H LS   LP 
Sbjct: 1569 SSLREEISRHAPLYGANLESLSMKELDTIARIHEEGLRQIHALQQRKG--HTLSH-GLPQ 1625

Query: 242  VPGLY-SSP---PSMAVGLPSSLIPTSSVAPNGAGIHGNGHMNGSMGSWFN 288
               LY ++P   P MA+GLP  LI      PNG+G+H NGH+NGS+  WF+
Sbjct: 1626 GHTLYPTTPPQLPPMAIGLPPQLI------PNGSGVHSNGHINGSVRPWFS 1670



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.127    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,149,547
Number of extensions: 265253
Number of successful extensions: 2117
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2199
Number of HSP's successfully gapped: 10
Length of query: 290
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 192
Effective length of database: 8,419,801
Effective search space: 1616601792
Effective search space used: 1616601792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 111 (47.4 bits)