Os02g0613000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EF-Hand type domain containing protein.
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Os02g0613000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EF-Hand type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.24 | 0.591 | 9.1 | -0.0299 | 0.874 | -1.98 | -2.85 | 6 | 0.0209 | 4.13 | 25.19 | 1306 | -- | -- |
| 162.18 | 0.593 | 9.23 | -1.38 | 0.812 | -1.43 | -2.49 | -- | -0.0335 | 4.25 | 24.62 | 8373 | -- | -- |
| 180.34 | 0.625 | 9.12 | -0.067 | 0.865 | -1.99 | -- | 6 | -0.0787 | 3.86 | 26.06 | 1289 | -- | -- |
| 181.37 | 0.627 | 9.2 | -1.3 | 0.795 | -1.55 | -- | -- | 0.0896 | 4.21 | 22.35 | 8373 | -- | -- |
| 205.24 | 0.667 | 9.1 | 0.0152 | -- | -2.14 | -- | 6.56 | 0.0468 | -- | 25.23 | 1833 | -- | -- |
| 242.39 | 0.73 | 9.33 | -2.05 | 0.704 | -- | -3.02 | -- | -0.523 | 4.54 | -- | -- | -- | -- |
| 266.75 | 0.765 | 9.32 | -2.03 | 0.685 | -- | -- | -- | -0.507 | 4.58 | -- | -- | -- | -- |
| 209.77 | 0.675 | 9.2 | -1.29 | -- | -1.53 | -- | -- | 0.0447 | -- | 22.23 | 7743 | -- | -- |
| 194.78 | 0.65 | 9.13 | -- | 0.742 | -2.14 | -- | -- | 0.345 | 4.38 | 16.2 | 24276 | -- | -- |
| 291.75 | 0.798 | 9.32 | -2 | -- | -- | -- | -- | -0.489 | -- | -- | -- | -- | -- |
| 374.94 | 0.906 | 9.27 | -- | 0.647 | -- | -- | -- | -0.282 | 4.66 | -- | -- | -- | -- |
| 222.18 | 0.694 | 9.08 | -- | -- | -2.37 | -- | -- | 0.592 | -- | 16.76 | 14895 | -- | -- |
| 397.23 | 0.93 | 9.27 | -- | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.39 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 6 | 153.65 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 11 | 156.18 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 4 |
| 13 | 156.46 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 15 | 157.29 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 16 | 157.31 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 17 | 157.35 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 18 | 157.62 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 26 | 158.19 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 45 | 158.95 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 46 | 158.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 51 | 159.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 52 | 159.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 70 | 159.90 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 72 | 159.93 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 86 | 160.15 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 88 | 160.17 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 96 | 160.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 103 | 160.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 108 | 160.38 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 111 | 160.42 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 114 | 160.43 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 116 | 160.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 125 | 160.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 9 |
| 161 | 160.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 177 | 160.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 229 | 161.13 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 235 | 161.14 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 310 | 161.39 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 314 | 161.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 315 | 161.40 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 330 | 161.45 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 12 |
| 354 | 161.51 | radiation | 10 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 357 | 161.51 | radiation | 10 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 367 | 161.53 | radiation | 10 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 399 | 161.63 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 405 | 161.67 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 408 | 161.69 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 412 | 161.70 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 439 | 161.82 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 453 | 161.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 461 | 161.96 | humidity | 90 | 43200 | > th | dose dependent | sin | 15 | NA |
| 469 | 161.99 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 516 | 162.25 | humidity | 90 | 43200 | > th | dose independent | sin | 15 | NA |
| 570 | 162.49 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 6 |
| 581 | 162.55 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 602 | 162.64 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 11 |
| 633 | 162.80 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 647 | 162.86 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 648 | 162.87 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 709 | 163.21 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 736 | 163.33 | temperature | 25 | 14400 | > th | dose independent | rect. | 2 | 12 |
| 770 | 163.47 | wind | 7 | 43200 | < th | dose independent | sin | 0 | NA |
| 779 | 163.49 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 786 | 163.52 | wind | 7 | 43200 | > th | dose independent | sin | 0 | NA |
| 800 | 163.60 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 814 | 163.64 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 817 | 163.65 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 823 | 163.67 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 861 | 163.80 | humidity | 90 | 43200 | < th | dose independent | sin | 15 | NA |
| 895 | 163.94 | temperature | 25 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 899 | 163.95 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 918 | 164.01 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 955 | 164.16 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 982 | 164.26 | temperature | 25 | 14400 | > th | dose independent | sin | 2 | NA |
| 988 | 164.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |