BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0613000 Os02g0613000|AK066756
         (478 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32060.1  | chr4:15501134-15503321 FORWARD LENGTH=499          496   e-140

>AT4G32060.1 | chr4:15501134-15503321 FORWARD LENGTH=499
          Length = 498

 Score =  496 bits (1276), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 235/365 (64%), Positives = 293/365 (80%), Gaps = 1/365 (0%)

Query: 109 FLFGDSYRRRVFFNYEKRIRTRSPPEKIFEYFASIRNPEGEVYMLPADLMRAVVPVFPPS 168
           F+FGD+YRR++FFNYEKR+R +SPPEK+FEYFAS+R  +GE+ M PADLMRA+VPVFPPS
Sbjct: 132 FIFGDAYRRKIFFNYEKRLRLQSPPEKVFEYFASVRTDKGEILMKPADLMRAIVPVFPPS 191

Query: 169 ESKIVREGSLRGERNPGELHCAPSEFFMLFDTNGDGLISFAEYIFFVTLLSIPESSFNIA 228
           ES +VREG L GERNPGEL C+PSEFFMLFD + DGLISF EYIFFVTLLSIPESSF +A
Sbjct: 192 ESHLVREGYLTGERNPGELRCSPSEFFMLFDVDNDGLISFKEYIFFVTLLSIPESSFAVA 251

Query: 229 FKMFDLDHSGEIDKEEFKKVMALMRSYHRQGAAHRDGLRFGLKVGQSVENGGLVEYFFGK 288
           FKMFD D++GEIDKEEFK VM+LMRS HRQG  HRDGLR GL +  SVE+GGLVEYFFGK
Sbjct: 252 FKMFDTDNNGEIDKEEFKTVMSLMRSQHRQGVGHRDGLRTGLHMTGSVEDGGLVEYFFGK 311

Query: 289 DGNEQLRYDKFSNFLKQLHDEIVRLEFSHYDVKSSKTISVKDFALSMVASADMNHINKLL 348
           DG+++L++DKF+ F+K L +E++RLEF+HYD K   +IS KDFALSMVA+AD +H++KLL
Sbjct: 312 DGSQKLKHDKFTKFMKDLTEEMLRLEFAHYDYKRRGSISAKDFALSMVAAADASHLSKLL 371

Query: 349 DRVXXXXXXXXXXXLRITFEEFKAFADLRRKLEPFAMAIFSYGKVNGLLTKQDLKRAATH 408
           DRV           +RI+ +EFK F +LR KL PF++A+F+YGK NGLLT +D KRAA+ 
Sbjct: 372 DRVESLSEHPHLRDMRISLKEFKQFDELRSKLGPFSLALFAYGKANGLLTMKDFKRAASQ 431

Query: 409 VCEVDLTDKVVDVIFLVFDANRDGSLSADEFLRALQRRESDIRQPASSGLMGVFTCLLNC 468
           VC + L+D V+++ F VFD+N+DG+LS DEFLR L RRE D+ QP + GL   F+     
Sbjct: 432 VCGITLSDNVIEIAFHVFDSNQDGNLSVDEFLRVLHRRERDVAQPIAKGLSRYFSDGWKG 491

Query: 469 TK-CS 472
           +K CS
Sbjct: 492 SKNCS 496



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.141    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,100,701
Number of extensions: 367647
Number of successful extensions: 1544
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1557
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 376
Effective length of database: 8,310,137
Effective search space: 3124611512
Effective search space used: 3124611512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)