Os02g0612800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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Os02g0612800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14 | 0.176 | 12.4 | 0.472 | 0.771 | -0.457 | -0.00656 | -0.265 | 0.33 | 1.3 | 5.115 | 4384 | -- | -- |
| 14.04 | 0.175 | 12.4 | 0.472 | 0.77 | -0.437 | 0.0155 | -- | 0.322 | 1.27 | 5.199 | 4395 | -- | -- |
| 13.99 | 0.174 | 12.4 | 0.472 | 0.77 | -0.458 | -- | -0.263 | 0.331 | 1.29 | 5.12 | 4395 | -- | -- |
| 14.03 | 0.174 | 12.4 | 0.473 | 0.77 | -0.424 | -- | -- | 0.325 | 1.29 | 5.117 | 4395 | -- | -- |
| 49 | 0.328 | 12.4 | 0.557 | -- | -0.34 | -- | 0.0459 | 0.352 | -- | 5.12 | 4395 | -- | -- |
| 16.51 | 0.19 | 12.4 | 0.613 | 0.783 | -- | 0.0306 | -- | 0.339 | 1.26 | -- | -- | -- | -- |
| 16.52 | 0.19 | 12.4 | 0.612 | 0.783 | -- | -- | -- | 0.338 | 1.26 | -- | -- | -- | -- |
| 49 | 0.327 | 12.4 | 0.556 | -- | -0.345 | -- | -- | 0.353 | -- | 5.12 | 4395 | -- | -- |
| 17.61 | 0.195 | 12.4 | -- | 0.732 | -0.58 | -- | -- | 0.221 | 1.19 | 7.45 | 36605 | -- | -- |
| 54.4 | 0.345 | 12.4 | 0.642 | -- | -- | -- | -- | 0.355 | -- | -- | -- | -- | -- |
| 26.37 | 0.24 | 12.4 | -- | 0.794 | -- | -- | -- | 0.27 | 1.29 | -- | -- | -- | -- |
| 53.86 | 0.342 | 12.4 | -- | -- | -0.546 | -- | -- | 0.171 | -- | 8.015 | 45072 | -- | -- |
| 65.27 | 0.377 | 12.4 | -- | -- | -- | -- | -- | 0.283 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.74 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 2 | 13.76 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 3 | 13.76 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 6 | 13.79 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 16 | 13.79 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 13 |
| 44 | 13.84 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 47 | 13.85 | wind | 5 | 4320 | > th | dose independent | rect. | 22 | 19 |
| 48 | 13.86 | humidity | 70 | 43200 | < th | dose dependent | rect. | 24 | 10 |
| 52 | 13.87 | humidity | 70 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 62 | 13.90 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 64 | 13.91 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 65 | 13.91 | wind | 5 | 4320 | > th | dose independent | rect. | 14 | 21 |
| 72 | 13.93 | wind | 5 | 4320 | < th | dose independent | rect. | 22 | 19 |
| 87 | 13.95 | wind | 5 | 4320 | < th | dose independent | rect. | 14 | 21 |
| 135 | 14.02 | wind | 5 | 4320 | > th | dose independent | no | NA | NA |
| 138 | 14.02 | wind | 5 | 4320 | > th | dose independent | rect. | 9 | 22 |
| 141 | 14.02 | wind | 5 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 163 | 14.04 | humidity | 70 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 172 | 14.04 | wind | 5 | 4320 | > th | dose independent | rect. | 16 | 23 |
| 190 | 14.05 | wind | 5 | 4320 | > th | dose independent | rect. | 2 | 23 |
| 191 | 14.05 | wind | 5 | 4320 | > th | dose independent | rect. | 4 | 23 |
| 197 | 14.06 | wind | 5 | 4320 | < th | dose independent | no | NA | NA |
| 211 | 14.06 | wind | 5 | 4320 | < th | dose independent | rect. | 8 | 22 |
| 217 | 14.06 | wind | 5 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 221 | 14.06 | wind | 5 | 4320 | < th | dose independent | rect. | 16 | 23 |
| 223 | 14.06 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 276 | 14.09 | wind | 5 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 278 | 14.09 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 297 | 14.10 | wind | 5 | 4320 | < th | dose independent | rect. | 2 | 23 |
| 299 | 14.10 | wind | 5 | 4320 | > th | dose dependent | rect. | 21 | 20 |
| 300 | 14.11 | wind | 5 | 4320 | > th | dose independent | sin | 13 | NA |
| 332 | 14.12 | wind | 5 | 4320 | < th | dose independent | sin | 13 | NA |
| 356 | 14.12 | wind | 5 | 4320 | > th | dose dependent | rect. | 14 | 20 |
| 372 | 14.13 | humidity | 60 | 43200 | < th | dose dependent | sin | 7 | NA |
| 594 | 14.22 | temperature | 15 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 674 | 14.24 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 685 | 14.25 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 10 |
| 686 | 14.25 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 12 |
| 702 | 14.26 | wind | 5 | 4320 | > th | dose independent | sin | 2 | NA |
| 703 | 14.26 | temperature | 15 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 727 | 14.27 | humidity | 60 | 43200 | < th | dose independent | sin | 9 | NA |
| 731 | 14.27 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 5 |
| 755 | 14.27 | wind | 5 | 4320 | > th | dose dependent | no | NA | NA |
| 763 | 14.27 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 776 | 14.28 | temperature | 15 | 14400 | > th | dose independent | sin | 7 | NA |
| 779 | 14.28 | temperature | 15 | 14400 | > th | dose independent | sin | 4 | NA |
| 782 | 14.28 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 787 | 14.28 | temperature | 15 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 825 | 14.28 | temperature | 20 | 14400 | < th | dose dependent | rect. | 6 | 9 |
| 844 | 14.28 | wind | 5 | 4320 | > th | dose dependent | rect. | 2 | 23 |
| 845 | 14.28 | wind | 5 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 917 | 14.30 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 921 | 14.30 | temperature | 15 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 972 | 14.31 | temperature | 15 | 14400 | < th | dose independent | sin | 7 | NA |
| 976 | 14.31 | temperature | 15 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 981 | 14.31 | temperature | 15 | 14400 | < th | dose independent | rect. | 4 | 7 |