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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0606800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Isochorismatase hydrolase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0235) R2 : 0.289
β1 : -0.215 (0.0862) R2dD : 0.0101 R2D : 0.00476
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.98 (0.693) R2dE : 0.0803 R2E : -0.254
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -26 (2.38) R2dD*E : 0.53 R2D*E : 0.199
γ1 : -0.0595 (0.0502) R2dN8 : 0.0028 R2N8 : -0.000629
σ : 0.44
deviance : 89.15
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.8311
memory length : 93
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.567
open length of G : 1.33

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
86.03 0.436 10 -0.204 0.217 2.6 0.321 -25.3 -0.0546 23 0.8481 91 0.383 1.47
113.85 0.497 10 -0.144 0.243 1.93 0.231 -- -0.056 23.1 0.8741 7 2.82 1.15
86.28 0.433 10 -0.211 0.214 2.68 -- -25.3 -0.06 23.4 0.8235 93 0.579 1.33
113.33 0.496 10 -0.17 0.211 2.24 -- -- -0.0715 22.1 0.8928 7 2.84 1.15
89.15 0.44 10 -0.215 -- 2.98 -- -26 -0.0595 -- 0.8311 93 0.567 1.33
121.2 0.516 10 -0.214 0.218 -- 0.0166 -- -0.0582 23.3 -- -- -- --
121.2 0.516 10 -0.215 0.217 -- -- -- -0.0583 23.3 -- -- -- --
115.72 0.501 10 -0.171 -- 2.44 -- -- -0.0726 -- 0.8584 6 2.8 1.18
114.13 0.498 10 -- 0.2 2.35 -- -- -0.0482 22.1 0.8853 7 2.85 1.14
124.16 0.521 10 -0.209 -- -- -- -- -0.0563 -- -- -- -- --
122.42 0.518 10 -- 0.215 -- -- -- -0.0344 23.2 -- -- -- --
116.49 0.503 10 -- -- 2.49 -- -- -0.0508 -- 0.8565 6 2.81 1.15
125.32 0.523 10 -- -- -- -- -- -0.0331 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.62 wind 1.0 90 < th dose dependent rect. 24 1
4 92.11 wind 1.0 90 < th dose independent rect. 24 2
5 92.73 wind 1.0 90 < th dose independent rect. 24 4
10 95.45 precipitation 0.1 10 > th dose independent rect. 1 1
20 95.45 precipitation 0.1 10 > th dose dependent rect. 1 1
63 102.71 temperature 20.0 10 > th dose independent rect. 1 3
68 103.06 temperature 20.0 270 > th dose independent rect. 22 6
70 103.31 temperature 20.0 270 > th dose independent rect. 21 8
83 103.91 wind 1.0 270 < th dose independent rect. 15 13
84 103.97 wind 1.0 270 < th dose dependent rect. 22 6
100 104.39 temperature 20.0 90 > th dose independent rect. 24 6
126 104.94 temperature 20.0 270 > th dose independent rect. 10 18
134 105.08 wind 1.0 270 < th dose dependent rect. 15 13
138 105.11 wind 1.0 270 < th dose dependent rect. 15 11
147 105.22 temperature 20.0 270 > th dose independent rect. 23 3
165 105.56 radiation 20.0 1440 < th dose independent rect. 11 2
166 105.56 temperature 20.0 10 > th dose independent rect. 22 9
167 105.56 radiation 1.0 1440 < th dose dependent rect. 9 8
172 105.71 wind 1.0 270 > th dose independent sin 14 NA
205 106.06 temperature 20.0 270 > th dose independent rect. 1 1
210 106.13 wind 1.0 270 < th dose independent sin 13 NA
256 106.90 wind 7.0 4320 > th dose independent rect. 18 1
264 107.02 wind 7.0 4320 > th dose independent rect. 17 4
280 107.12 wind 1.0 270 > th dose independent rect. 19 12
284 107.14 radiation 1.0 1440 < th dose independent rect. 13 2
285 107.14 radiation 1.0 1440 < th dose dependent rect. 13 2
286 107.15 wind 1.0 270 < th dose dependent sin 14 NA
296 107.25 wind 7.0 4320 < th dose independent rect. 18 1
297 107.26 wind 9.0 4320 < th dose independent rect. 17 4
307 107.31 wind 7.0 4320 > th dose dependent rect. 17 4
319 107.41 radiation 10.0 4320 < th dose dependent rect. 19 10
332 107.54 radiation 1.0 1440 > th dose independent rect. 10 5
334 107.54 temperature 20.0 10 > th dose independent rect. 12 19
335 107.55 wind 7.0 4320 > th dose dependent rect. 17 1
340 107.59 radiation 20.0 1440 < th dose dependent rect. 11 2
341 107.60 temperature 20.0 90 > th dose independent sin 9 NA
344 107.61 radiation 40.0 1440 < th dose dependent rect. 12 1
347 107.62 radiation 1.0 1440 > th dose dependent rect. 12 1
348 107.63 radiation 1.0 1440 < th dose independent rect. 10 5
378 107.78 radiation 1.0 1440 < th dose independent rect. 11 1
379 107.78 radiation 1.0 1440 > th dose independent rect. 13 2
382 107.78 radiation 1.0 1440 < th dose dependent rect. 11 1
391 107.81 radiation 40.0 43200 < th dose dependent rect. 19 10
400 107.90 wind 9.0 4320 < th dose independent rect. 17 8
407 107.94 atmosphere 1005.0 720 > th dose independent rect. 21 3
450 108.09 radiation 30.0 43200 < th dose independent rect. 17 9
451 108.09 wind 9.0 4320 > th dose independent rect. 17 11
486 108.22 atmosphere 1005.0 270 < th dose dependent rect. 1 1
490 108.24 radiation 20.0 1440 > th dose independent rect. 12 1
491 108.24 wind 1.0 43200 < th dose independent rect. 2 2
531 108.36 atmosphere 1005.0 720 < th dose independent rect. 19 6
539 108.38 radiation 10.0 43200 < th dose dependent rect. 24 5
552 108.42 wind 1.0 43200 > th dose independent rect. 2 2
594 108.55 humidity 90.0 14400 > th dose independent rect. 5 2
606 108.58 radiation 10.0 43200 < th dose dependent rect. 4 1
609 108.59 wind 1.0 43200 < th dose dependent rect. 2 2
648 108.69 atmosphere 1005.0 720 < th dose independent rect. 20 3
654 108.71 humidity 90.0 14400 < th dose independent rect. 5 2
670 108.75 temperature 20.0 270 > th dose independent rect. 21 18
700 108.82 humidity 70.0 1440 < th dose independent rect. 12 1
711 108.82 radiation 10.0 1440 < th dose dependent rect. 8 16
712 108.82 radiation 10.0 1440 < th dose dependent rect. 8 20
733 108.87 temperature 20.0 10 > th dose dependent rect. 1 3
749 108.92 humidity 80.0 43200 < th dose independent rect. 24 16
763 108.97 humidity 80.0 43200 > th dose independent rect. 24 16
767 108.98 temperature 20.0 90 < th dose independent rect. 16 17
778 109.00 temperature 20.0 30 > th dose dependent rect. 1 1
791 109.04 humidity 80.0 43200 < th dose independent rect. 23 18
794 109.05 atmosphere 1005.0 10 < th dose dependent rect. 1 5
802 109.08 temperature 20.0 270 > th dose independent rect. 19 21
807 109.09 wind 9.0 4320 < th dose independent rect. 16 17
818 109.12 radiation 1.0 1440 > th dose independent rect. 9 1
824 109.14 temperature 20.0 90 < th dose independent sin 11 NA
902 109.27 radiation 1.0 43200 < th dose independent rect. 19 10
935 109.33 radiation 10.0 1440 < th dose dependent sin 22 NA
945 109.35 humidity 80.0 43200 < th dose independent rect. 1 14
980 109.42 atmosphere 1005.0 270 < th dose dependent rect. 24 3
988 109.44 radiation 1.0 43200 < th dose independent rect. 24 5