BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0606800 Os02g0606800|AK073760
         (252 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22570.1  | chr2:9589604-9590846 REVERSE LENGTH=245            295   2e-80

>AT2G22570.1 | chr2:9589604-9590846 REVERSE LENGTH=245
          Length = 244

 Score =  295 bits (754), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 126/204 (61%), Positives = 167/204 (81%)

Query: 47  DVSNGFCTVGAGNLAPVTPNKQIEKMVDEAARLAKVFCERNWPVFAFLDTHYPDKPEPPF 106
           DV NGFCT+G+GN+AP   N+QI KMV+E+A+LA+ FC+R WPV AF+D+H+PD PE P+
Sbjct: 37  DVVNGFCTIGSGNMAPTKHNEQISKMVEESAKLAREFCDRKWPVLAFIDSHHPDIPERPY 96

Query: 107 PPHCIIGSGEENFVPALEWLEKDPNVTIRRKDCIDGYLGAFEKDGSNVFSDWVAKFQIKT 166
           PPHCIIG+ E   VPAL+WLE +   T+RRKDCI+G++G+ E DGSNVF DWV + QIK 
Sbjct: 97  PPHCIIGTEESELVPALKWLESEDCATLRRKDCINGFVGSMESDGSNVFVDWVKEKQIKV 156

Query: 167 VLVLGICTDFCVLDFASSALAARNIGRVPPLEDVVIYSEGCATYNLPVEVARSMQGTLAH 226
           ++V+GICTD CV DF ++AL+ARN G + P+EDVV+YS GCAT++LP+ VA+ ++G  AH
Sbjct: 157 IVVVGICTDICVFDFVATALSARNHGVLSPVEDVVVYSRGCATFDLPLHVAKDIKGAQAH 216

Query: 227 PQDLMHHMGLYMAKSRGAKVVDRI 250
           PQ+LMHH+GLYMAK RGA+VV +I
Sbjct: 217 PQELMHHVGLYMAKGRGAQVVSKI 240



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,263,848
Number of extensions: 227605
Number of successful extensions: 430
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 156
Effective length of database: 8,474,633
Effective search space: 1322042748
Effective search space used: 1322042748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)