Os02g0605900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chitinase (EC 3.2.1.14) A.
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Os02g0605900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chitinase (EC 3.2.1.14) A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 389.86 | 0.928 | 6.4 | -1.44 | 2.98 | -4.99 | 4.93 | -2.69 | -0.00573 | 21.8 | 0.6784 | 728 | 8.74 | -- |
| 392.85 | 0.923 | 6.39 | -1.34 | 3.48 | -5.49 | 3.19 | -- | 0.0238 | 21.6 | 0.5294 | 718 | 9.51 | -- |
| 430.96 | 0.967 | 6.29 | -1.32 | 1.62 | -4.81 | -- | 0.0365 | 0.143 | 21.2 | 0.5503 | 720 | 7.52 | -- |
| 423.29 | 0.958 | 6.34 | -1.43 | 1.58 | -4.2 | -- | -- | 0.0253 | 21.8 | 0.53 | 735 | 7.79 | -- |
| 435.71 | 0.972 | 6.3 | -1.59 | -- | -3.26 | -- | 0.135 | -0.0326 | -- | 0.5898 | 753 | 6.93 | -- |
| 543.72 | 1.09 | 6.32 | -1.8 | 1.33 | -- | -2.21 | -- | -0.222 | 8.73 | -- | -- | -- | -- |
| 559.48 | 1.11 | 6.32 | -1.88 | 1.35 | -- | -- | -- | -0.224 | 8.5 | -- | -- | -- | -- |
| 434.16 | 0.97 | 6.3 | -1.44 | -- | -3.3 | -- | -- | -0.00132 | -- | 0.53 | 770 | 6.92 | -- |
| 474.51 | 1.01 | 6.3 | -- | 1.73 | -4.48 | -- | -- | 0.211 | 21.6 | 0.52 | 743 | 7.7 | -- |
| 660.75 | 1.2 | 6.35 | -1.87 | -- | -- | -- | -- | -0.211 | -- | -- | -- | -- | -- |
| 652.55 | 1.19 | 6.27 | -- | 1.34 | -- | -- | -- | -0.0151 | 8.6 | -- | -- | -- | -- |
| 491.26 | 1.03 | 6.27 | -- | -- | -3.46 | -- | -- | 0.127 | -- | 0.53 | 770 | 6.92 | -- |
| 753.31 | 1.28 | 6.31 | -- | -- | -- | -- | -- | -0.00364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 409.67 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 5 | 412.93 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 16 |
| 6 | 413.58 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 14 |
| 9 | 414.36 | radiation | 1 | 720 | < th | dose dependent | sin | 22 | NA |
| 12 | 414.64 | radiation | 1 | 720 | < th | dose independent | sin | 22 | NA |
| 32 | 419.77 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 78 | 423.29 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 20 |
| 82 | 423.60 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 94 | 424.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 106 | 425.26 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 118 | 425.43 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 178 | 428.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 183 | 429.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 198 | 429.63 | radiation | 40 | 43200 | > th | dose dependent | rect. | 15 | 20 |
| 200 | 429.67 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 4 |
| 226 | 429.98 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 227 | 429.98 | radiation | 40 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 231 | 430.00 | radiation | 40 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 232 | 430.00 | radiation | 40 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 246 | 430.32 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 248 | 430.34 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 21 |
| 268 | 430.56 | radiation | 40 | 43200 | > th | dose dependent | sin | 11 | NA |
| 271 | 430.66 | radiation | 40 | 43200 | < th | dose independent | sin | 10 | NA |
| 345 | 431.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 454 | 433.46 | temperature | 25 | 720 | > th | dose dependent | sin | 19 | NA |
| 459 | 433.53 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 519 | 434.24 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 522 | 434.34 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 529 | 434.49 | radiation | 10 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 530 | 434.49 | radiation | 10 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 531 | 434.49 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 536 | 434.52 | radiation | 10 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 589 | 434.95 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 18 |
| 590 | 434.95 | radiation | 40 | 43200 | > th | dose independent | rect. | 15 | 20 |
| 597 | 435.07 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 610 | 435.13 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 611 | 435.14 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 631 | 435.17 | radiation | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 641 | 435.46 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 642 | 435.46 | radiation | 20 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 643 | 435.46 | radiation | 20 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 673 | 435.52 | radiation | 20 | 43200 | < th | dose independent | sin | 11 | NA |
| 690 | 435.62 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 728 | 435.71 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 753 | 435.72 | radiation | 40 | 43200 | < th | dose independent | no | NA | NA |
| 821 | 435.73 | radiation | 40 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 866 | 435.97 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 946 | 436.33 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 952 | 436.39 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 984 | 436.72 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 23 |