Os02g0602500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Isy1-like splicing family protein.
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Os02g0602500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Isy1-like splicing family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.23 | 0.231 | 10.6 | 0.942 | 0.251 | -0.427 | -0.541 | -0.116 | 0.146 | 14 | 26.6 | 1473 | -- | -- |
| 24.24 | 0.229 | 10.6 | 0.958 | 0.255 | -0.437 | -0.527 | -- | 0.152 | 14 | 26.73 | 1470 | -- | -- |
| 25.31 | 0.234 | 10.6 | 0.946 | 0.256 | -0.437 | -- | -0.0385 | 0.147 | 14.3 | 26.68 | 1507 | -- | -- |
| 25.29 | 0.234 | 10.6 | 0.957 | 0.267 | -0.455 | -- | -- | 0.148 | 14.4 | 26.73 | 1535 | -- | -- |
| 28.23 | 0.247 | 10.6 | 0.904 | -- | -0.477 | -- | -0.198 | 0.135 | -- | 26.5 | 1211 | -- | -- |
| 32.83 | 0.269 | 10.6 | 0.822 | 0.285 | -- | -0.462 | -- | 0.138 | 14 | -- | -- | -- | -- |
| 33.63 | 0.272 | 10.6 | 0.809 | 0.286 | -- | -- | -- | 0.136 | 14.2 | -- | -- | -- | -- |
| 28.23 | 0.247 | 10.6 | 0.953 | -- | -0.501 | -- | -- | 0.146 | -- | 26.45 | 1211 | -- | -- |
| 47.35 | 0.32 | 10.6 | -- | 0.27 | -0.338 | -- | -- | -0.0114 | 14 | 28.83 | 1747 | -- | -- |
| 38.5 | 0.29 | 10.6 | 0.797 | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
| 50.86 | 0.334 | 10.6 | -- | 0.271 | -- | -- | -- | 0.0455 | 14.2 | -- | -- | -- | -- |
| 50.09 | 0.33 | 10.6 | -- | -- | -0.318 | -- | -- | -0.0278 | -- | 30.2 | 1183 | -- | -- |
| 55.24 | 0.347 | 10.6 | -- | -- | -- | -- | -- | 0.0402 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.04 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 2 | 24.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 3 | 24.09 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 4 | 24.10 | temperature | 30 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 21 | 24.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 12 |
| 22 | 24.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 16 |
| 45 | 24.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 71 | 24.24 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 99 | 24.27 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 110 | 24.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 113 | 24.31 | temperature | 30 | 1440 | > th | dose dependent | sin | 8 | NA |
| 135 | 24.34 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 138 | 24.34 | radiation | 30 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 141 | 24.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 172 | 24.37 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 173 | 24.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 181 | 24.39 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 245 | 24.47 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 325 | 24.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 338 | 24.53 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 340 | 24.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 363 | 24.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 375 | 24.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 471 | 24.56 | radiation | 30 | 1440 | > th | dose independent | rect. | 15 | 18 |
| 472 | 24.56 | temperature | 25 | 1440 | > th | dose dependent | sin | 1 | NA |
| 502 | 24.58 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 668 | 24.59 | radiation | 30 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 737 | 24.63 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 18 |
| 890 | 24.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 955 | 24.73 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |