BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0602500 Os02g0602500|AK073602
         (203 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18790.1  | chr3:6477853-6478755 FORWARD LENGTH=301            134   3e-32

>AT3G18790.1 | chr3:6477853-6478755 FORWARD LENGTH=301
          Length = 300

 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 79/102 (77%)

Query: 1   MTDLDGNIVAIPNPSGRGPGYRYFGAAKKLPGVRELFDKPPEVRKRRTRYEIHKRINAXX 60
           MTDL+GNI+ +PNPSGRGPGYRYFGAAKKLPGVRELF+KPPE+RKR+TRY+I+KRI+A  
Sbjct: 107 MTDLEGNIIDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRKTRYDIYKRIDASY 166

Query: 61  XXXXXXXXXMLERLEAVAEKRMRNEVITEWHRVERVRREAMK 102
                    +LE+LE  +E  MR   + EW R++ VR+EA K
Sbjct: 167 YGYRDDEDGILEKLERKSEGGMRKRSVEEWRRLDEVRKEARK 208




 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 39/48 (81%)

Query: 156 IAHVPLPDEKEIERMVLERKKKELLSKYTSDALQVEQEEAKEMLNVRR 203
           + HVPLPDEKEIE+MVLE+KK +LLSKY S+ L  +Q EAK MLN+ R
Sbjct: 253 VVHVPLPDEKEIEKMVLEKKKMDLLSKYASEDLVEQQTEAKSMLNIHR 300



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,055,350
Number of extensions: 97807
Number of successful extensions: 359
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 109
Effective length of database: 8,529,465
Effective search space: 929711685
Effective search space used: 929711685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)