Os02g0600200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : IQ calmodulin-binding region domain containing protein.
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Os02g0600200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : IQ calmodulin-binding region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.88 | 0.265 | 14 | -0.41 | 0.591 | -0.743 | -0.368 | 0.509 | -0.357 | 23.6 | 16.01 | 459 | -- | -- |
| 32.11 | 0.264 | 14 | -0.472 | 0.588 | -0.709 | -0.312 | -- | -0.379 | 23.7 | 15.97 | 463 | -- | -- |
| 32.44 | 0.265 | 14 | -0.409 | 0.589 | -0.752 | -- | 0.446 | -0.362 | 23.7 | 15.5 | 445 | -- | -- |
| 32.56 | 0.266 | 14 | -0.486 | 0.595 | -0.755 | -- | -- | -0.382 | 23.7 | 14.9 | 466 | -- | -- |
| 44.11 | 0.311 | 14 | -0.305 | -- | -0.956 | -- | 0.928 | -0.302 | -- | 17.36 | 23 | -- | -- |
| 38.92 | 0.292 | 14 | -0.667 | 0.596 | -- | -0.267 | -- | -0.497 | 1.03 | -- | -- | -- | -- |
| 39.21 | 0.293 | 14 | -0.658 | 0.597 | -- | -- | -- | -0.496 | 1.09 | -- | -- | -- | -- |
| 44.87 | 0.312 | 14 | -0.447 | -- | -0.941 | -- | -- | -0.341 | -- | 17.2 | 11 | -- | -- |
| 38.12 | 0.288 | 14 | -- | 0.611 | -0.991 | -- | -- | -0.3 | 23.3 | 12.99 | 478 | -- | -- |
| 61.34 | 0.366 | 14 | -0.635 | -- | -- | -- | -- | -0.484 | -- | -- | -- | -- | -- |
| 50.61 | 0.333 | 14 | -- | 0.586 | -- | -- | -- | -0.423 | 1.04 | -- | -- | -- | -- |
| 49.69 | 0.328 | 14 | -- | -- | -1.21 | -- | -- | -0.275 | -- | 14.04 | 12 | -- | -- |
| 71.97 | 0.396 | 14 | -- | -- | -- | -- | -- | -0.414 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 8 | 30.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 23 | 30.57 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 10 |
| 25 | 30.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 29 | 30.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 31 | 30.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 33 | 30.75 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 16 |
| 35 | 30.79 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 56 | 30.99 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 10 |
| 71 | 31.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 80 | 31.15 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 95 | 31.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 104 | 31.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 150 | 31.42 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 171 | 31.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 17 |
| 197 | 31.57 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 8 |
| 224 | 31.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 10 |
| 232 | 31.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 234 | 31.66 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 251 | 31.69 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 262 | 31.72 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 284 | 31.76 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 16 |
| 290 | 31.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 13 |
| 292 | 31.79 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 305 | 31.82 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 309 | 31.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 314 | 31.83 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 330 | 31.85 | radiation | 30 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 343 | 31.87 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 348 | 31.88 | humidity | 70 | 10 | > th | dose independent | rect. | 18 | 9 |
| 354 | 31.88 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 357 | 31.89 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 20 |
| 365 | 31.91 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 384 | 31.94 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 19 |
| 385 | 31.94 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 481 | 32.07 | temperature | 10 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 511 | 32.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 520 | 32.13 | humidity | 70 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 528 | 32.14 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 531 | 32.14 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 547 | 32.14 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 18 |
| 562 | 32.15 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 21 |
| 563 | 32.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 589 | 32.19 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 636 | 32.23 | humidity | 80 | 270 | > th | dose independent | rect. | 23 | 8 |
| 646 | 32.24 | humidity | 50 | 270 | > th | dose independent | rect. | 7 | 16 |
| 649 | 32.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 652 | 32.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 712 | 32.29 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 731 | 32.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 747 | 32.32 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 794 | 32.35 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 22 |
| 837 | 32.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 948 | 32.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 7 |