BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0600200 Os02g0600200|AK066974
         (266 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67700.2  | chr1:25374295-25375810 FORWARD LENGTH=232          201   3e-52

>AT1G67700.2 | chr1:25374295-25375810 FORWARD LENGTH=232
          Length = 231

 Score =  201 bits (511), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 111/127 (87%)

Query: 72  RSQQQRMPQLPKIEDDGNPRFVIFIRTANVYFWYPLNIVTGGTTAKIMLAAKDNFLGKYI 131
           R  Q+  P +PKIEDDGNPRFVIFIR ANVY WYPL+I+ GGTTAKIM+AAKDN LGKYI
Sbjct: 63  RQYQRTPPPMPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLGKYI 122

Query: 132 YKDTLARNLAAVIYKDEDDIIDTAKEQYRVLKTDNEFRYGYKVVENGNLRSALTTSNVIE 191
           YKDT+ARN+AAVIY+DE +I  TA +Q+RVL+T  EFRYGYK+VENGN+R+AL+TS+VIE
Sbjct: 123 YKDTIARNIAAVIYRDEKEIQKTAIKQHRVLRTATEFRYGYKLVENGNMRAALSTSDVIE 182

Query: 192 LPKKEEL 198
           LP +++L
Sbjct: 183 LPTQDQL 189



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,474,751
Number of extensions: 119728
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 169
Effective length of database: 8,447,217
Effective search space: 1427579673
Effective search space used: 1427579673
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)