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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0599200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein phosphatase 2C-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.29 (0.0341) R2 : 0.0157
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.194 (0.0719) R2dN8 : 0.0203 R2N8 : 0.0157
σ : 0.643
deviance : 189.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
149.15 0.574 5.34 -0.685 0.713 0.399 -1.45 1.57 -0.283 17.8 29.9 254 -- --
149.5 0.569 5.32 -0.542 0.712 0.575 -1.54 -- -0.274 17.7 29.9 264 -- --
153.66 0.577 5.34 -0.772 0.758 0.414 -- 2.28 -0.29 17.8 29.54 301 -- --
154.97 0.58 5.32 -0.515 0.755 0.677 -- -- -0.279 17.8 29.81 279 -- --
173.63 0.614 5.35 -0.841 -- 0.133 -- 2.38 -0.323 -- 31.5 1669 -- --
156.85 0.587 5.31 -0.629 0.523 -- -1.91 -- -0.244 17.9 -- -- -- --
165.72 0.603 5.31 -0.616 0.513 -- -- -- -0.252 18.1 -- -- -- --
173.92 0.614 5.31 -0.53 -- 0.423 -- -- -0.326 -- 31.4 1615 -- --
161.68 0.592 5.32 -- 0.806 0.774 -- -- -0.232 17.8 29.89 307 -- --
179.35 0.626 5.3 -0.63 -- -- -- -- -0.264 -- -- -- -- --
175.71 0.62 5.3 -- 0.522 -- -- -- -0.184 18 -- -- -- --
180.93 0.626 5.3 -- -- 0.412 -- -- -0.218 -- 29.6 1256 -- --
189.83 0.643 5.29 -- -- -- -- -- -0.194 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.02 temperature 30.0 270 < th dose independent rect. 3 21
4 145.53 temperature 25.0 10 < th dose independent rect. 2 7
6 145.61 wind 1.0 4320 > th dose independent rect. 12 13
9 145.81 wind 1.0 4320 < th dose independent rect. 12 13
11 145.96 temperature 30.0 270 < th dose independent rect. 7 17
16 146.20 radiation 1.0 270 < th dose dependent rect. 8 16
18 146.23 wind 1.0 4320 < th dose dependent rect. 12 13
26 146.38 temperature 30.0 90 < th dose dependent rect. 1 8
28 146.42 radiation 1.0 270 < th dose independent rect. 8 16
29 146.42 wind 1.0 4320 < th dose dependent rect. 9 16
30 146.43 temperature 10.0 270 > th dose dependent rect. 11 9
33 146.51 atmosphere 1005.0 90 > th dose dependent rect. 1 7
42 146.62 wind 7.0 10 < th dose independent rect. 2 19
43 146.62 temperature 30.0 10 < th dose dependent rect. 2 7
47 146.67 atmosphere 1005.0 10 > th dose dependent rect. 2 6
51 146.72 wind 1.0 4320 > th dose independent sin 19 NA
54 146.74 wind 1.0 4320 < th dose independent sin 19 NA
75 146.97 temperature 15.0 90 > th dose independent rect. 1 20
100 147.15 wind 7.0 10 < th dose dependent rect. 1 9
113 147.25 radiation 40.0 4320 > th dose dependent rect. 15 17
142 147.50 temperature 15.0 10 > th dose dependent rect. 13 9
143 147.51 temperature 25.0 30 > th dose independent rect. 13 8
144 147.51 temperature 30.0 270 < th dose independent rect. 18 22
174 147.67 wind 1.0 4320 < th dose dependent sin 18 NA
208 147.80 humidity 90.0 90 < th dose dependent rect. 2 5
215 147.85 temperature 30.0 270 < th dose independent rect. 13 11
224 147.88 atmosphere 1000.0 90 > th dose independent rect. 21 4
240 147.95 wind 7.0 90 < th dose independent rect. 1 20
247 147.97 radiation 1.0 270 > th dose independent sin 18 NA
253 147.99 temperature 25.0 10 < th dose independent rect. 2 4
255 147.99 wind 1.0 10 > th dose independent rect. 22 15
257 148.00 humidity 90.0 270 < th dose dependent rect. 24 7
259 148.01 humidity 80.0 720 > th dose independent rect. 23 9
263 148.02 temperature 30.0 270 < th dose independent rect. 19 16
270 148.05 radiation 40.0 1440 > th dose dependent rect. 15 1
294 148.07 radiation 10.0 30 < th dose dependent rect. 5 21
301 148.11 humidity 80.0 10 < th dose independent rect. 13 8
305 148.12 humidity 80.0 90 < th dose independent rect. 13 7
306 148.12 atmosphere 1005.0 90 > th dose independent rect. 1 7
308 148.13 wind 1.0 4320 < th dose independent rect. 11 9
309 148.13 wind 9.0 10 < th dose dependent rect. 1 21
320 148.16 radiation 20.0 270 < th dose independent rect. 19 15
325 148.19 humidity 90.0 720 < th dose dependent rect. 1 3
342 148.24 wind 7.0 270 < th dose independent rect. 23 21
346 148.25 wind 1.0 10 > th dose independent rect. 4 22
350 148.27 temperature 15.0 270 > th dose independent rect. 10 9
355 148.28 wind 7.0 270 < th dose independent rect. 11 8
359 148.28 humidity 50.0 90 > th dose dependent rect. 7 18
379 148.34 atmosphere 1005.0 90 > th dose dependent rect. 2 2
382 148.35 wind 1.0 4320 > th dose independent rect. 11 9
406 148.38 temperature 25.0 270 > th dose dependent rect. 11 16
411 148.39 humidity 80.0 10 > th dose independent rect. 7 19
417 148.41 radiation 1.0 270 > th dose independent rect. 11 18
420 148.42 atmosphere 1005.0 10 > th dose independent rect. 2 6
426 148.43 precipitation 0.1 90 < th dose independent rect. 1 20
429 148.43 precipitation 0.1 90 < th dose dependent rect. 1 20
431 148.44 atmosphere 1000.0 270 > th dose independent rect. 21 1
432 148.44 wind 5.0 10 < th dose independent rect. 1 9
440 148.45 radiation 1.0 270 > th dose independent rect. 11 8
470 148.48 radiation 1.0 14400 > th dose independent rect. 6 2
472 148.49 temperature 10.0 90 > th dose independent rect. 21 4
473 148.49 temperature 30.0 90 < th dose independent rect. 21 4
474 148.49 humidity 50.0 90 > th dose independent rect. 21 4
478 148.49 radiation 1.0 90 < th dose independent rect. 21 4
484 148.49 atmosphere 1015.0 90 < th dose independent rect. 1 20
486 148.49 radiation 1.0 90 < th dose dependent rect. 21 4
491 148.50 radiation 1.0 14400 < th dose independent rect. 6 2
501 148.51 wind 1.0 4320 < th dose independent rect. 12 2
502 148.51 wind 9.0 90 < th dose independent rect. 21 4
504 148.51 temperature 30.0 270 < th dose independent rect. 14 22
507 148.52 humidity 70.0 270 > th dose independent rect. 19 14
509 148.53 wind 1.0 4320 > th dose independent rect. 12 2
510 148.53 precipitation 0.1 90 < th dose independent rect. 21 4
513 148.53 precipitation 0.1 90 < th dose dependent rect. 21 4
516 148.53 humidity 50.0 270 > th dose dependent rect. 5 19
518 148.54 wind 1.0 4320 < th dose independent rect. 11 4
534 148.57 radiation 40.0 1440 > th dose independent rect. 15 1
552 148.57 wind 9.0 270 < th dose independent rect. 22 23
556 148.58 temperature 30.0 270 < th dose independent rect. 5 11
594 148.63 wind 1.0 4320 < th dose dependent rect. 12 2
615 148.64 humidity 50.0 10 > th dose dependent rect. 7 19
636 148.67 humidity 50.0 90 > th dose dependent rect. 9 16
664 148.71 humidity 60.0 270 > th dose independent rect. 4 20
676 148.74 humidity 80.0 720 < th dose independent rect. 21 15
689 148.76 wind 1.0 90 > th dose independent rect. 21 4
691 148.76 humidity 60.0 14400 > th dose dependent rect. 12 1
700 148.78 atmosphere 1000.0 10 > th dose independent rect. 21 5
709 148.79 temperature 20.0 30 > th dose dependent rect. 13 16
710 148.79 temperature 30.0 90 < th dose dependent rect. 9 16
715 148.80 wind 9.0 90 < th dose dependent rect. 1 20
716 148.81 temperature 30.0 720 < th dose independent rect. 13 2
733 148.83 humidity 80.0 1440 > th dose independent rect. 24 3
734 148.83 atmosphere 1010.0 270 < th dose independent rect. 11 8
745 148.84 precipitation 0.1 270 < th dose independent rect. 23 21
752 148.84 precipitation 0.1 270 < th dose dependent rect. 23 21
773 148.88 radiation 1.0 14400 > th dose independent rect. 6 9
774 148.88 radiation 1.0 14400 < th dose independent rect. 6 9
778 148.89 radiation 30.0 10 < th dose independent rect. 21 15
782 148.89 temperature 30.0 90 < th dose dependent rect. 11 14
813 148.93 precipitation 0.1 270 < th dose independent rect. 11 8
818 148.93 precipitation 0.1 270 < th dose dependent rect. 11 8
822 148.94 humidity 70.0 14400 > th dose independent rect. 12 1
823 148.94 humidity 70.0 270 > th dose independent rect. 19 4
828 148.94 wind 1.0 4320 < th dose dependent rect. 21 4
837 148.95 precipitation 0.1 270 < th dose independent rect. 22 23
840 148.95 precipitation 0.1 270 < th dose dependent rect. 22 23
849 148.97 wind 1.0 270 > th dose independent rect. 11 8
852 148.97 humidity 90.0 270 < th dose dependent rect. 12 7
857 148.98 precipitation 0.1 270 < th dose independent rect. 21 1
864 148.98 precipitation 0.1 270 < th dose dependent rect. 21 1
869 148.99 temperature 10.0 270 > th dose independent rect. 21 1
870 148.99 temperature 30.0 270 < th dose independent rect. 21 1
871 148.99 humidity 50.0 270 > th dose independent rect. 21 1
875 148.99 radiation 1.0 270 < th dose independent rect. 21 1
882 148.99 temperature 10.0 270 > th dose independent rect. 22 23
883 148.99 radiation 1.0 270 < th dose dependent rect. 21 1
888 148.99 humidity 50.0 90 > th dose dependent rect. 21 4
905 149.00 humidity 50.0 4320 > th dose independent rect. 3 8
917 149.01 wind 9.0 270 < th dose independent rect. 21 1
919 149.01 radiation 40.0 1440 < th dose independent rect. 15 7
925 149.01 radiation 10.0 30 < th dose dependent rect. 9 17
951 149.05 humidity 60.0 270 > th dose independent rect. 7 17
953 149.06 humidity 70.0 14400 > th dose independent rect. 10 3
954 149.06 temperature 25.0 270 < th dose independent rect. 17 7
959 149.06 radiation 1.0 270 < th dose dependent sin 19 NA
965 149.06 radiation 40.0 270 < th dose dependent rect. 19 15
969 149.07 atmosphere 1010.0 90 < th dose independent rect. 21 4
983 149.08 temperature 10.0 90 > th dose independent rect. 1 8
985 149.08 humidity 50.0 90 > th dose independent rect. 1 8
986 149.08 atmosphere 995.0 90 > th dose independent rect. 1 8
987 149.08 atmosphere 1015.0 90 < th dose independent rect. 1 8
990 149.08 precipitation 0.1 14400 < th dose independent rect. 3 12
993 149.08 temperature 10.0 90 > th dose independent rect. 9 16
997 149.08 precipitation 0.1 14400 < th dose dependent rect. 3 12