BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0599200 Os02g0599200|AK119492
         (445 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25070.1  | chr2:10663517-10665366 REVERSE LENGTH=356           72   7e-13
AT4G31860.1  | chr4:15406685-15408589 REVERSE LENGTH=358           62   6e-10
AT4G27800.1  | chr4:13852013-13854091 REVERSE LENGTH=389           58   1e-08

>AT2G25070.1 | chr2:10663517-10665366 REVERSE LENGTH=356
          Length = 355

 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 7/83 (8%)

Query: 1   MLICDPDIHTHDITGDMEFLVIASQGLWSCMESADVVAYIHVRLLEGVELRVICEELVQS 60
           M+  DPDI+T D+  D +FLV+A  G+W CM S ++V +IH +L    +L  +CE++V  
Sbjct: 248 MVTADPDINTIDLCDDDDFLVVACDGIWDCMSSQELVDFIHEQLKSETKLSTVCEKVVDR 307

Query: 61  GL----ASGE---NTTVILVQFK 76
            L    A+GE   N T+ILVQFK
Sbjct: 308 CLAPDTATGEGCDNMTIILVQFK 330



>AT4G31860.1 | chr4:15406685-15408589 REVERSE LENGTH=358
          Length = 357

 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 7/78 (8%)

Query: 6   PDIHTHDITGDMEFLVIASQGLWSCMESADVVAYIHVRLLEGVELRVICEELVQSGLA-- 63
           PD++T ++  D +FLV+A  G+W CM S  +V +IH +L    +L V+CE+++   LA  
Sbjct: 253 PDVNTVELCDDDDFLVLACDGIWDCMTSQQLVDFIHEQLNSETKLSVVCEKVLDRCLAPN 312

Query: 64  --SGE---NTTVILVQFK 76
              GE   N T+ILV+FK
Sbjct: 313 TSGGEGCDNMTMILVRFK 330



>AT4G27800.1 | chr4:13852013-13854091 REVERSE LENGTH=389
          Length = 388

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 1   MLICDPDIHTHDITGDMEFLVIASQGLWSCMESADVVAYIHVRLLEGVELRVICEELVQS 60
           M++  PDI    +T D+EF+++AS GLW  M+S+DVV+Y+  +L +   +++ CE L Q 
Sbjct: 272 MVVATPDIFQVPLTSDVEFIILASDGLWDYMKSSDVVSYVRDQLRKHGNVQLACESLAQV 331

Query: 61  GL--ASGENTTVIL 72
            L   S +N ++I+
Sbjct: 332 ALDRRSQDNISIII 345



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.309    0.128    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,922,172
Number of extensions: 308560
Number of successful extensions: 807
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 3
Length of query: 445
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 343
Effective length of database: 8,310,137
Effective search space: 2850376991
Effective search space used: 2850376991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 113 (48.1 bits)