Os02g0596500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Snf7 family protein.
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Os02g0596500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Snf7 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.73 | 0.247 | 10.9 | -0.902 | 0.31 | 0.584 | 0.265 | -1.2 | -0.223 | 0.459 | 19.35 | 1412 | -- | -- |
| 29.15 | 0.251 | 10.9 | -0.571 | 0.274 | 0.579 | 0.295 | -- | -0.14 | 0.495 | 16.38 | 2459 | -- | -- |
| 28 | 0.246 | 10.9 | -0.891 | 0.323 | 0.575 | -- | -1.15 | -0.213 | 0.62 | 19.3 | 1500 | -- | -- |
| 29.02 | 0.251 | 10.8 | -0.598 | 0.311 | 0.689 | -- | -- | -0.138 | 1.43 | 15 | 2028 | -- | -- |
| 31.63 | 0.262 | 10.9 | -0.764 | -- | 0.795 | -- | -0.733 | -0.195 | -- | 17.1 | 1034 | -- | -- |
| 37.18 | 0.286 | 10.8 | -0.359 | 0.345 | -- | 0.236 | -- | -0.0045 | 0.674 | -- | -- | -- | -- |
| 37.42 | 0.286 | 10.8 | -0.368 | 0.345 | -- | -- | -- | -0.00592 | 0.795 | -- | -- | -- | -- |
| 32.14 | 0.264 | 10.8 | -0.603 | -- | 0.815 | -- | -- | -0.146 | -- | 16.16 | 1006 | -- | -- |
| 36.88 | 0.283 | 10.8 | -- | 0.329 | 0.355 | -- | -- | -0.0352 | 0.954 | 20.45 | 1777 | -- | -- |
| 44.84 | 0.313 | 10.8 | -0.356 | -- | -- | -- | -- | 0.000387 | -- | -- | -- | -- | -- |
| 40.99 | 0.299 | 10.8 | -- | 0.339 | -- | -- | -- | 0.0351 | 0.746 | -- | -- | -- | -- |
| 40.5 | 0.296 | 10.8 | -- | -- | 0.51 | -- | -- | -0.0462 | -- | 19.6 | 993 | -- | -- |
| 48.18 | 0.324 | 10.8 | -- | -- | -- | -- | -- | 0.0398 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.24 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 2 | 26.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 11 | 26.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 34 | 26.79 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 37 | 26.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 38 | 26.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 41 | 26.83 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 91 | 26.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 93 | 26.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 103 | 27.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 108 | 27.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 112 | 27.02 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 161 | 27.07 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 206 | 27.12 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 256 | 27.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 365 | 27.23 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 379 | 27.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 676 | 27.44 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 800 | 27.55 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 856 | 27.59 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 873 | 27.60 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 922 | 27.64 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 976 | 27.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 986 | 27.69 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 999 | 27.70 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |