BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0596500 Os02g0596500|AK072562
(228 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G09260.1 | chr5:2876797-2878355 FORWARD LENGTH=217 259 1e-69
AT5G63880.2 | chr5:25563890-25565258 FORWARD LENGTH=244 241 2e-64
>AT5G09260.1 | chr5:2876797-2878355 FORWARD LENGTH=217
Length = 216
Score = 259 bits (661), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 138/230 (60%), Positives = 168/230 (73%), Gaps = 16/230 (6%)
Query: 1 MGNIFVKKPKVTDVDRAILTLKTQRRKLAQFQQQLEKVIEAEKEAARQLVQQXXXXXXXX 60
MGN+FVKKPK+T+VDRAIL+LKTQRRKL Q+QQQLEKVIEAEK+AAR L+++
Sbjct: 1 MGNLFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEKVIEAEKQAARDLIREKRKDRALL 60
Query: 61 XXXXXXXXXXXXXQVDTWQMNVEQQLSDIELASKQKAVFDSLKAGNAALKSIQNEINIDD 120
QVD W +NVEQQL+DIEL SKQKAVF+SLK GN A+K+IQ+E+N+DD
Sbjct: 61 ALKKKRTQEELLKQVDQWLINVEQQLADIELTSKQKAVFESLKQGNNAIKAIQSEVNLDD 120
Query: 121 VQKLMDDTAEAKAYQDEINAALGEQLSAEDEEAVMAEFENLEAQLAVESLPDAPVTEVRP 180
VQKLMDDTAEAKAYQDE++A LGE+LSAEDEE ++AEF+NLE+ L VE +P+ P TE+ P
Sbjct: 121 VQKLMDDTAEAKAYQDELSAILGEKLSAEDEEEILAEFDNLESLLIVEDMPEVPTTELMP 180
Query: 181 EEKSETPAVTEAAEDIDEVIELPDVPTKAP--ERPEAAEKTKVLEEPLPA 228
EE E ++LPDVPTKAP + K KVLEEPL A
Sbjct: 181 EEP--------------EKMDLPDVPTKAPVASNETTSTKRKVLEEPLEA 216
>AT5G63880.2 | chr5:25563890-25565258 FORWARD LENGTH=244
Length = 243
Score = 241 bits (615), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 135/259 (52%), Positives = 169/259 (65%), Gaps = 47/259 (18%)
Query: 1 MGNIFVKKPKVTDVDRAILTLKTQRRKLAQFQQQLEKVIEAEKEAARQLVQQXXXXXXXX 60
MGN+FVKKP++T+VDRAIL+LKTQRRKL Q+QQ+LEKVIEAEK+AAR L+++
Sbjct: 1 MGNLFVKKPQITEVDRAILSLKTQRRKLGQYQQKLEKVIEAEKQAARDLIREKRKDRALL 60
Query: 61 XXXXXXXXXXXXXQVDTWQMNVEQQLSDIELASKQKAVFDSLKAGNAALKSIQNEINIDD 120
QVD W +NVEQQL+DIEL SKQKAVF+SLK GN+A+K+IQ+E+++DD
Sbjct: 61 ALRKKRTQEELLKQVDQWVINVEQQLTDIELTSKQKAVFESLKQGNSAIKAIQSELDLDD 120
Query: 121 VQKLMDDTAEAKAYQD------------------------EINAALGEQLSAEDEEAVMA 156
VQKLMDDTA+AKAYQD E+NA LGE+LSAEDEE ++A
Sbjct: 121 VQKLMDDTADAKAYQDCENLYNLFCRAFVFDDSIYISECQELNAILGEKLSAEDEEDILA 180
Query: 157 EFENLEAQLAVESLPDAPVTEVRPEEKSETPAVTEAAEDIDEVIELPDVPTKAP------ 210
EF+NLE+QL V+ +P+ P E EK ++LPDVPTK P
Sbjct: 181 EFDNLESQLIVDEMPEVPTKESEESEK----------------LDLPDVPTKTPVASNAE 224
Query: 211 -ERPEAAEKTKVLEEPLPA 228
E+A KTKVLEEPLPA
Sbjct: 225 ITPAESATKTKVLEEPLPA 243
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.306 0.124 0.318
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,810,544
Number of extensions: 133264
Number of successful extensions: 743
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 738
Number of HSP's successfully gapped: 5
Length of query: 228
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 133
Effective length of database: 8,502,049
Effective search space: 1130772517
Effective search space used: 1130772517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 110 (47.0 bits)