Os02g0592500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0592500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.84 | 0.322 | 10.7 | -0.0707 | 0.394 | 0.765 | -0.133 | -0.551 | 0.0253 | 0.0435 | 21.2 | 1252 | -- | -- |
| 47.56 | 0.321 | 10.7 | 0.0348 | 0.419 | 0.777 | -0.227 | -- | 0.0598 | 0.154 | 21.22 | 1304 | -- | -- |
| 46.9 | 0.319 | 10.7 | -0.0699 | 0.385 | 0.755 | -- | -0.592 | 0.0251 | 0.0198 | 21.27 | 1210 | -- | -- |
| 47.63 | 0.321 | 10.7 | 0.0537 | 0.408 | 0.821 | -- | -- | 0.0463 | 23.9 | 21.2 | 1316 | -- | -- |
| 55.14 | 0.346 | 10.7 | -0.0744 | -- | 0.801 | -- | -0.617 | 0.0154 | -- | 21.3 | 1007 | -- | -- |
| 66.09 | 0.381 | 10.7 | 0.389 | 0.454 | -- | -0.282 | -- | 0.274 | 0.259 | -- | -- | -- | -- |
| 66.43 | 0.382 | 10.7 | 0.4 | 0.455 | -- | -- | -- | 0.275 | 0.158 | -- | -- | -- | -- |
| 56.12 | 0.349 | 10.7 | 0.0781 | -- | 0.847 | -- | -- | 0.0503 | -- | 21.24 | 1008 | -- | -- |
| 47.7 | 0.322 | 10.7 | -- | 0.409 | 0.843 | -- | -- | 0.0406 | 24 | 21.21 | 1321 | -- | -- |
| 79.43 | 0.416 | 10.7 | 0.415 | -- | -- | -- | -- | 0.282 | -- | -- | -- | -- | -- |
| 70.65 | 0.393 | 10.7 | -- | 0.46 | -- | -- | -- | 0.231 | 0.205 | -- | -- | -- | -- |
| 56.26 | 0.349 | 10.7 | -- | -- | 0.871 | -- | -- | 0.0362 | -- | 21.23 | 1020 | -- | -- |
| 83.97 | 0.428 | 10.7 | -- | -- | -- | -- | -- | 0.236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.72 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 6 | 46.80 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 8 | 46.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 24 | 46.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 30 | 46.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 92 | 47.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 109 | 47.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 137 | 47.30 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 146 | 47.32 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 175 | 47.38 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 200 | 47.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 218 | 47.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 277 | 47.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 314 | 47.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 361 | 47.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 394 | 47.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 757 | 48.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 834 | 48.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 839 | 48.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 877 | 48.73 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 934 | 48.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 982 | 48.91 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |