BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0592500 Os02g0592500|AK070526
         (297 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27830.4  | chr5:9861203-9862742 FORWARD LENGTH=323            175   2e-44

>AT5G27830.4 | chr5:9861203-9862742 FORWARD LENGTH=323
          Length = 322

 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/261 (44%), Positives = 151/261 (57%), Gaps = 13/261 (4%)

Query: 36  KGVCVSPGGRFPAFSSEXXXXXXXXXXXXDLALCRVFRQNTCCDVSQTFSALLSVRKLAS 95
           KGVCVS GGRFP +  E            DL LCRVFR+ TCC   QT  A ++VR LA+
Sbjct: 54  KGVCVSKGGRFPPYELEGKPPKSVGRGSKDLTLCRVFRKKTCCSSVQTNPAFVAVRNLAT 113

Query: 96  TGEGSQECLHLWELLECSICDXXXXXXXXXXXICASFCDMVFKACSEAYFAIDVKTQALS 155
            GE SQECL L+ELLECSIC+           ICASFCD VF+AC +AYFA +   + + 
Sbjct: 114 YGEASQECLELFELLECSICNPNVGIQPGPPRICASFCDRVFEACKDAYFASNALKRVIG 173

Query: 156 PCGLG-DILCGKAHKWVSNGTELCRSAGFSVQALETTSGGVDDTFCYGGKASFDAISSSW 214
           PCG+  DI+C KA  W SNGT  C +AGF+VQ  + +     +  CYG KAS +++  SW
Sbjct: 174 PCGVNDDIICIKASNWESNGTSFCEAAGFAVQRNDDSR----EKPCYGSKASLESVVESW 229

Query: 215 T--SSKERPVLSDVASWNLEDFRRWAREMPASERVSWAIGGMVLTAGLIFIS-KRKSYIP 271
           +  S KE P+ ++  S   +D  +W REM   +++S  +G   L AG+  I   R+S   
Sbjct: 230 SRDSRKETPLKTETLSC-FKDLLQWVREMTTIQKIS--LGMSFLIAGMFLIRYYRQSNNR 286

Query: 272 GQKQ--AAIARNVRKLESRVN 290
            QKQ  AAI R  R+L    N
Sbjct: 287 NQKQRLAAIQRTARRLRGNGN 307



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.132    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,691,489
Number of extensions: 208855
Number of successful extensions: 443
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 199
Effective length of database: 8,419,801
Effective search space: 1675540399
Effective search space used: 1675540399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)