Os02g0582400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0582400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.61 | 0.167 | 11.5 | 1.09 | 0.396 | -0.523 | -0.179 | 0.701 | 0.237 | 20.9 | 9.771 | 647 | -- | -- |
| 12.92 | 0.167 | 11.5 | 0.971 | 0.389 | -0.501 | -0.0379 | -- | 0.204 | 21.2 | 9.78 | 757 | -- | -- |
| 12.7 | 0.166 | 11.5 | 1.07 | 0.395 | -0.527 | -- | 0.545 | 0.231 | 20.9 | 10.47 | 647 | -- | -- |
| 12.92 | 0.167 | 11.5 | 0.972 | 0.389 | -0.502 | -- | -- | 0.204 | 21.2 | 9.679 | 757 | -- | -- |
| 17.36 | 0.195 | 11.4 | 1 | -- | -0.465 | -- | 0.556 | 0.207 | -- | 10.47 | 647 | -- | -- |
| 16.14 | 0.188 | 11.5 | 0.841 | 0.276 | -- | -0.0841 | -- | 0.126 | 21.3 | -- | -- | -- | -- |
| 16.17 | 0.188 | 11.5 | 0.843 | 0.276 | -- | -- | -- | 0.126 | 21.3 | -- | -- | -- | -- |
| 17.63 | 0.196 | 11.5 | 0.928 | -- | -0.454 | -- | -- | 0.186 | -- | 10.47 | 647 | -- | -- |
| 34.77 | 0.275 | 11.5 | -- | 0.299 | -0.0891 | -- | -- | 0.0459 | 21.3 | 21.2 | 470 | -- | -- |
| 20.62 | 0.212 | 11.5 | 0.845 | -- | -- | -- | -- | 0.125 | -- | -- | -- | -- | -- |
| 34.92 | 0.276 | 11.5 | -- | 0.277 | -- | -- | -- | 0.032 | 21.6 | -- | -- | -- | -- |
| 38.96 | 0.291 | 11.5 | -- | -- | 0.146 | -- | -- | 0.0101 | -- | 17.68 | 738 | -- | -- |
| 39.45 | 0.293 | 11.5 | -- | -- | -- | -- | -- | 0.0311 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 2 | 12.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 18 |
| 4 | 12.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 16 |
| 8 | 12.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 10 | 12.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 12 | 12.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 91 | 12.44 | temperature | 30 | 270 | < th | dose dependent | sin | 19 | NA |
| 93 | 12.45 | temperature | 15 | 720 | > th | dose dependent | sin | 0 | NA |
| 96 | 12.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 97 | 12.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 17 |
| 100 | 12.46 | temperature | 25 | 720 | < th | dose dependent | sin | 23 | NA |
| 129 | 12.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 138 | 12.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 11 |
| 159 | 12.55 | temperature | 15 | 270 | > th | dose dependent | sin | 20 | NA |
| 186 | 12.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 193 | 12.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 205 | 12.59 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 232 | 12.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 234 | 12.61 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 235 | 12.61 | temperature | 30 | 30 | < th | dose dependent | sin | 17 | NA |
| 248 | 12.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 252 | 12.62 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 258 | 12.63 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 286 | 12.65 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 316 | 12.66 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 389 | 12.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 22 |
| 392 | 12.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 426 | 12.69 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 469 | 12.70 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 8 |
| 477 | 12.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 10 |
| 539 | 12.71 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 14 |
| 574 | 12.72 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 620 | 12.73 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 664 | 12.74 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 704 | 12.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 706 | 12.75 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 9 |
| 714 | 12.75 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 798 | 12.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 802 | 12.77 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 856 | 12.78 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |