BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0582400 Os02g0582400|AK070989
         (236 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07640.1  | chr3:2438171-2439661 FORWARD LENGTH=242            132   2e-31

>AT3G07640.1 | chr3:2438171-2439661 FORWARD LENGTH=242
          Length = 241

 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 7/241 (2%)

Query: 1   MRVAPKVLVLVXXXXXXXXXXXXXXXPTPG--LTRESTPLELPLAKYGLDGEKASGELVN 58
           M+VA K++ L                P+P   L +    ++LPL KYG++G +  G +V+
Sbjct: 1   MKVAEKIVFLWNDSDGFAATISDTLNPSPSSPLRKLEEQIQLPLDKYGVEGVETGGSIVH 60

Query: 59  FSDSSGDPQVSFFVLPDYKPPVAACAMNEILALVSSEAPSTQPTLIVPFMTRSPNYYHGA 118
           F D +   QVS F+L  Y+PPV  CAMNE+L L++    ST PT+I PF   +       
Sbjct: 61  FVDENEVYQVSIFLLRSYEPPVLVCAMNELLDLIT-RGSSTLPTIIAPFFVAASKLKFNN 119

Query: 119 KT----GQLATLHGAEIGATTEFTQMLVDGTTKLPQSLQVRSEPILCLLEMVRVLNIPTV 174
           ++     + A+LH  ++   TE +++      K P S+Q+  EP+ CLL + RV  +PT 
Sbjct: 120 RSLEANNRKASLHYVQVATETETSRLFASRIEKPPLSMQIHYEPLSCLLHLARVKRLPTA 179

Query: 175 ILFASGGQHQGKSSTDVDLEVLQCVGDHLAKHINLEFSKETVLQRGIEKSPVFQEPWREL 234
           IL           + D +L+V+   G+ +A    L FS++ +     + S   + PWR L
Sbjct: 180 ILIGQRSNSLTHKALDEELQVIHETGELVASWTGLSFSRDRIKWSASKTSKEEESPWRAL 239

Query: 235 Y 235
           Y
Sbjct: 240 Y 240



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,768,746
Number of extensions: 187466
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 141
Effective length of database: 8,502,049
Effective search space: 1198788909
Effective search space used: 1198788909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)