Os02g0581400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase (EC 4.1.1.71).
FiT-DB / Search/ Help/ Sample detail
|
Os02g0581400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase (EC 4.1.1.71).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.57 | 0.356 | 3.31 | -0.607 | 0.00865 | 28.9 | -0.225 | -74.9 | 0.0047 | 17.9 | 49 | 11 | -- | -- |
| 63.86 | 0.375 | 3.09 | 0.00375 | 0.0443 | -0.072 | -0.185 | -- | -0.00452 | 18.1 | 49 | 11 | -- | -- |
| 57.69 | 0.354 | 3.31 | -0.604 | 0.0144 | 28.9 | -- | -74.9 | 0.00357 | 21.7 | 49 | 11 | -- | -- |
| 63.78 | 0.372 | 3.09 | -0.00425 | 0.0403 | 0.2 | -- | -- | -0.00351 | 18.2 | 53 | 15 | -- | -- |
| 57.7 | 0.354 | 3.31 | -0.604 | -- | 28.9 | -- | -74.9 | 0.00353 | -- | 49 | 11 | -- | -- |
| 63.88 | 0.375 | 3.09 | 0.000668 | 0.0439 | -- | -0.186 | -- | -0.00419 | 18 | -- | -- | -- | -- |
| 63.96 | 0.375 | 3.09 | 0.00207 | 0.044 | -- | -- | -- | -0.00502 | 18.8 | -- | -- | -- | -- |
| 63.73 | 0.372 | 3.09 | -0.0167 | -- | 0.239 | -- | -- | -0.00489 | -- | 52 | 43 | -- | -- |
| 63.66 | 0.372 | 3.08 | -- | 0.0428 | 0.246 | -- | -- | 0.00336 | 19.4 | 52 | 43 | -- | -- |
| 64.06 | 0.374 | 3.09 | 0.00111 | -- | -- | -- | -- | -0.00586 | -- | -- | -- | -- | -- |
| 63.96 | 0.374 | 3.09 | -- | 0.0439 | -- | -- | -- | -0.00525 | 18.9 | -- | -- | -- | -- |
| 63.73 | 0.372 | 3.09 | -- | -- | 0.25 | -- | -- | 0.00028 | -- | 52 | 72 | -- | -- |
| 64.06 | 0.374 | 3.09 | -- | -- | -- | -- | -- | -0.00599 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.12 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 17 | 14 |
| 2 | 54.13 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 15 | 57.43 | radiation | 10.0 | 10 | > th | dose independent | rect. | 17 | 1 |
| 29 | 58.73 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 31 | 58.77 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 17 | 1 |
| 73 | 59.29 | humidity | 50.0 | 10 | < th | dose independent | rect. | 17 | 19 |
| 77 | 59.34 | humidity | 50.0 | 10 | < th | dose independent | rect. | 17 | 1 |
| 95 | 59.72 | humidity | 50.0 | 10 | < th | dose dependent | sin | 9 | NA |
| 96 | 59.72 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 17 | 1 |
| 98 | 59.73 | humidity | 90.0 | 90 | > th | dose independent | rect. | 16 | 1 |
| 100 | 59.73 | temperature | 20.0 | 10 | < th | dose independent | rect. | 16 | 3 |
| 102 | 59.74 | temperature | 20.0 | 90 | < th | dose independent | rect. | 16 | 1 |
| 105 | 59.74 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 106 | 59.74 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 16 | 2 |
| 139 | 59.92 | temperature | 20.0 | 720 | > th | dose independent | rect. | 9 | 8 |
| 148 | 59.92 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 12 | 6 |
| 190 | 60.01 | humidity | 70.0 | 30 | < th | dose independent | rect. | 16 | 1 |
| 192 | 60.01 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 16 | 1 |
| 193 | 60.03 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 16 | 1 |
| 197 | 60.06 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 208 | 60.13 | wind | 7.0 | 30 | < th | dose independent | rect. | 16 | 1 |
| 241 | 60.23 | wind | 9.0 | 30 | < th | dose dependent | rect. | 16 | 1 |
| 247 | 60.31 | radiation | 20.0 | 30 | < th | dose independent | rect. | 16 | 1 |
| 249 | 60.33 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 1 |
| 253 | 60.34 | wind | 1.0 | 30 | > th | dose independent | rect. | 16 | 1 |
| 255 | 60.34 | temperature | 10.0 | 30 | > th | dose independent | rect. | 16 | 1 |
| 257 | 60.34 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 16 | 1 |
| 261 | 60.34 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 16 | 1 |
| 262 | 60.34 | temperature | 10.0 | 30 | > th | dose independent | rect. | 17 | 23 |
| 263 | 60.34 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 16 | 1 |
| 264 | 60.35 | humidity | 90.0 | 30 | < th | dose independent | rect. | 16 | 1 |
| 265 | 60.35 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 16 | 1 |
| 289 | 60.38 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 16 | 1 |
| 356 | 60.46 | humidity | 50.0 | 10 | < th | dose independent | sin | 9 | NA |
| 357 | 60.46 | humidity | 50.0 | 10 | < th | dose dependent | no | NA | NA |
| 523 | 60.62 | wind | 1.0 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 524 | 60.62 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 528 | 60.68 | wind | 9.0 | 30 | < th | dose independent | rect. | 17 | 23 |
| 569 | 60.75 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 580 | 60.81 | temperature | 15.0 | 720 | > th | dose independent | rect. | 5 | 16 |
| 595 | 60.91 | temperature | 20.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 596 | 60.91 | temperature | 15.0 | 720 | > th | dose independent | rect. | 21 | 8 |
| 597 | 60.91 | temperature | 15.0 | 720 | > th | dose independent | rect. | 17 | 16 |
| 612 | 61.01 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 614 | 61.01 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 643 | 61.06 | wind | 9.0 | 720 | < th | dose independent | rect. | 9 | 8 |
| 673 | 61.11 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 12 | 3 |
| 704 | 61.17 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 9 | 10 |
| 707 | 61.19 | humidity | 50.0 | 10 | > th | dose independent | sin | 11 | NA |
| 815 | 61.28 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 847 | 61.30 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 9 | 9 |