BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0581400 Os02g0581400|AK120415
         (153 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68890.1  | chr1:25896988-25906553 FORWARD LENGTH=1716         202   4e-53
AT3G48560.1  | chr3:18001530-18003542 REVERSE LENGTH=671           46   8e-06

>AT1G68890.1 | chr1:25896988-25906553 FORWARD LENGTH=1716
          Length = 1715

 Score =  202 bits (515), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 92/132 (69%), Positives = 115/132 (87%)

Query: 6   QSNKIESFIRRCSNINLAWASFIVEEFVRLGFTYFCIAPGSRSSPLALSASVHPLTTCIS 65
           +  ++ +F+R  +NIN  WAS I+EE  RLG TYFC+APGSRSS LA++A+ HPLTTC++
Sbjct: 348 RETEVSNFLRDEANINAVWASAIIEECTRLGLTYFCVAPGSRSSHLAIAAANHPLTTCLA 407

Query: 66  CYDERSLGFHALGYGRGSRKPAIVITSSGTAVSNLLPSVVEASQDFVPLILLTADRPPEL 125
           C+DERSL FHA+GY +GS KPA++ITSSGTAVSNLLP+VVEAS+DF+PL+LLTADRPPEL
Sbjct: 408 CFDERSLAFHAIGYAKGSLKPAVIITSSGTAVSNLLPAVVEASEDFLPLLLLTADRPPEL 467

Query: 126 QDVGANQAINQL 137
           Q VGANQAINQ+
Sbjct: 468 QGVGANQAINQI 479



>AT3G48560.1 | chr3:18001530-18003542 REVERSE LENGTH=671
          Length = 670

 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 1/113 (0%)

Query: 11  ESFIRRCS-NINLAWASFIVEEFVRLGFTYFCIAPGSRSSPLALSASVHPLTTCISCYDE 69
           E+FI R + +     A  +VE   R G       PG  S  +  + +       +    E
Sbjct: 85  ETFISRFAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHE 144

Query: 70  RSLGFHALGYGRGSRKPAIVITSSGTAVSNLLPSVVEASQDFVPLILLTADRP 122
           +   F A GY R S KP I I +SG   +NL+  + +A  D VPL+ +T   P
Sbjct: 145 QGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVP 197



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,384,892
Number of extensions: 127627
Number of successful extensions: 275
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 2
Length of query: 153
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 63
Effective length of database: 8,639,129
Effective search space: 544265127
Effective search space used: 544265127
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 107 (45.8 bits)