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Os02g0578400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Photosystem II oxygen evolving complex protein PsbQ family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0381) R2 : 0.89
β1 : 0.12 (0.14) R2dD : 0.000111 R2D : -0.0212
β2 : 5.67 (0.0994) R2dC : 0.813 R2C : 0.709
β3 : 2.7 (0.115) R2dE : 0.136 R2E : 0.0176
β4 : -2.48 (0.439) R2dD*C : 0.00896 R2D*C : -0.0132
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.795 (0.0812) R2dN8 : 0.033 R2N8 : 0.028
σ : 0.711
deviance : 233.05
__
_____
C
peak time of C : 19.1
E
wheather : temperature
threshold : 7.802
memory length : 113
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22.7
open length of G : 5.14

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
234.6 0.72 12.4 0.0776 5.69 2.66 -2.69 0.101 -0.828 19.2 8.691 103 22.9 5.1
233.05 0.711 12.4 0.12 5.67 2.7 -2.48 -- -0.795 19.1 7.802 113 22.7 5.14
252.21 0.74 12.4 0.153 5.71 2.67 -- 0.435 -0.855 19.2 8.442 114 22.8 5.13
251.08 0.738 12.4 0.0671 5.69 2.74 -- -- -0.856 19.1 7.773 120 22.7 5.23
1720.74 1.94 12.3 0.154 -- 2.49 -- -0.383 -1.06 -- -0.4905 2 22.2 5.62
367.25 0.898 12.4 0.154 5.48 -- -2.37 -- -0.849 20.2 -- -- -- --
384.48 0.918 12.4 0.223 5.48 -- -- -- -0.851 20.3 -- -- -- --
387.01 0.916 12.4 -0.213 -- 6.55 -- -- -1.01 -- -19.65 514 9.13 13.4
250.34 0.737 12.4 -- 5.83 2.85 -- -- -0.849 19 7.117 130 22.5 5.45
2043.33 2.11 12.2 0.184 -- -- -- -- -0.912 -- -- -- -- --
385.78 0.919 12.4 -- 5.48 -- -- -- -0.876 20.3 -- -- -- --
282.85 0.783 12.2 -- -- 5.54 -- -- -0.889 -- -51.25 339 9.77 15.2
2044.22 2.11 12.2 -- -- -- -- -- -0.933 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 238.06 temperature 10.0 90 > th dose dependent rect. 23 5
2 240.75 temperature 10.0 270 > th dose dependent rect. 23 2
3 242.63 wind 5.0 270 < th dose independent rect. 23 2
5 244.19 radiation 30.0 270 < th dose dependent rect. 3 6
6 244.56 wind 5.0 90 < th dose independent rect. 23 5
8 244.70 precipitation 0.1 90 < th dose independent rect. 23 5
9 244.70 precipitation 0.1 90 < th dose dependent rect. 23 5
11 244.91 precipitation 0.1 270 < th dose independent rect. 21 6
12 244.91 precipitation 0.1 270 < th dose dependent rect. 21 6
13 245.24 wind 7.0 270 < th dose independent rect. 21 6
16 245.50 temperature 10.0 90 > th dose independent rect. 23 5
17 245.50 temperature 30.0 90 < th dose independent rect. 23 5
18 245.50 humidity 50.0 90 > th dose independent rect. 23 5
21 245.50 atmosphere 995.0 90 > th dose independent rect. 23 5
22 245.50 radiation 1.0 90 < th dose independent rect. 23 5
27 245.50 temperature 10.0 90 > th dose independent rect. 4 19
28 245.50 radiation 1.0 90 < th dose dependent rect. 23 5
36 245.88 precipitation 0.1 270 < th dose independent rect. 23 2
37 245.88 precipitation 0.1 270 < th dose dependent rect. 23 2
38 245.95 temperature 10.0 270 > th dose independent rect. 21 6
39 245.95 temperature 30.0 270 < th dose independent rect. 21 6
40 245.95 humidity 50.0 270 > th dose independent rect. 21 6
43 245.95 atmosphere 995.0 270 > th dose independent rect. 21 6
44 245.95 radiation 1.0 270 < th dose independent rect. 21 6
50 245.95 radiation 1.0 270 < th dose dependent rect. 21 6
57 246.44 temperature 10.0 270 > th dose independent rect. 23 2
58 246.44 temperature 30.0 270 < th dose independent rect. 23 2
59 246.44 humidity 50.0 270 > th dose independent rect. 23 2
62 246.44 atmosphere 995.0 270 > th dose independent rect. 23 2
63 246.44 radiation 1.0 270 < th dose independent rect. 23 2
68 246.44 temperature 10.0 270 > th dose independent rect. 1 22
69 246.44 radiation 1.0 270 < th dose dependent rect. 23 2
74 246.98 wind 9.0 90 < th dose dependent rect. 23 5
75 247.17 radiation 20.0 270 < th dose independent rect. 3 6
76 247.26 humidity 50.0 90 > th dose dependent rect. 4 7
77 247.48 temperature 30.0 90 < th dose independent rect. 4 7
83 248.54 atmosphere 1015.0 270 < th dose independent rect. 3 18
87 249.03 wind 5.0 270 < th dose independent rect. 3 4
90 249.12 wind 9.0 270 < th dose dependent rect. 23 2
92 249.33 atmosphere 1015.0 90 < th dose independent rect. 23 5
97 249.78 atmosphere 1015.0 270 < th dose independent rect. 23 2
98 250.02 wind 9.0 90 < th dose independent rect. 4 19
112 250.64 temperature 10.0 270 > th dose independent rect. 2 20
120 251.12 radiation 40.0 270 < th dose dependent rect. 16 15
124 251.51 radiation 40.0 90 < th dose independent rect. 4 7
125 251.59 radiation 40.0 90 < th dose independent rect. 4 19
131 252.25 precipitation 0.1 90 < th dose independent rect. 4 19
132 252.25 precipitation 0.1 90 < th dose dependent rect. 4 19
135 252.79 wind 9.0 270 < th dose independent rect. 7 10
137 252.82 humidity 50.0 270 > th dose dependent rect. 2 8
138 252.89 precipitation 0.1 270 < th dose independent rect. 7 10
139 252.89 precipitation 0.1 270 < th dose dependent rect. 7 10
144 253.16 precipitation 0.1 270 < th dose independent rect. 7 20
145 253.16 precipitation 0.1 270 < th dose dependent rect. 7 20
147 253.42 temperature 10.0 270 > th dose independent rect. 7 10
148 253.42 atmosphere 1015.0 270 < th dose independent rect. 7 10
149 253.42 temperature 10.0 270 > th dose independent rect. 17 14
150 253.42 radiation 40.0 270 < th dose independent rect. 17 14
157 253.69 wind 1.0 270 > th dose independent rect. 23 2
167 254.18 radiation 40.0 90 < th dose dependent rect. 4 19
171 254.26 radiation 20.0 270 < th dose dependent rect. 4 3
172 254.27 wind 5.0 270 < th dose independent rect. 2 7
176 254.49 wind 9.0 270 < th dose dependent rect. 21 6
177 254.50 wind 7.0 270 < th dose dependent rect. 4 3
183 254.63 wind 9.0 270 < th dose independent rect. 17 14
187 254.71 temperature 10.0 10 > th dose dependent rect. 23 6
189 254.77 humidity 50.0 90 > th dose dependent rect. 23 5
211 255.02 atmosphere 995.0 90 > th dose independent rect. 4 19
212 255.21 wind 9.0 270 < th dose independent rect. 7 20
216 255.29 humidity 70.0 90 > th dose independent rect. 4 7
218 255.43 wind 9.0 270 < th dose independent rect. 2 20
219 255.45 wind 9.0 270 < th dose independent rect. 1 22
220 255.47 temperature 30.0 270 < th dose independent rect. 2 8
224 255.76 radiation 10.0 270 < th dose independent rect. 4 3
246 255.96 temperature 10.0 270 > th dose independent rect. 3 4
248 255.96 temperature 30.0 270 < th dose independent rect. 3 4
249 255.96 humidity 50.0 270 > th dose independent rect. 3 4
251 255.96 atmosphere 995.0 270 > th dose independent rect. 3 4
252 255.96 atmosphere 1015.0 270 < th dose independent rect. 3 4
253 255.96 radiation 40.0 270 < th dose independent rect. 3 4
254 255.96 temperature 10.0 270 > th dose independent rect. 7 20
278 256.63 precipitation 0.1 270 < th dose independent rect. 9 17
279 256.63 precipitation 0.1 270 < th dose dependent rect. 9 17
281 256.68 atmosphere 1015.0 270 < th dose independent rect. 21 6
286 256.82 precipitation 0.1 270 < th dose independent rect. 3 4
287 256.82 precipitation 0.1 270 < th dose dependent rect. 3 4
308 256.90 humidity 50.0 270 > th dose independent rect. 17 14
321 257.65 wind 9.0 90 < th dose dependent rect. 4 7
323 257.73 humidity 50.0 270 > th dose dependent rect. 23 2
326 257.84 wind 9.0 270 < th dose independent rect. 9 17
330 258.05 wind 9.0 10 < th dose dependent rect. 22 7
331 258.09 wind 1.0 270 > th dose independent rect. 22 4
332 258.17 radiation 1.0 10 < th dose dependent rect. 22 7
351 258.76 wind 1.0 270 > th dose independent rect. 21 6
354 258.85 temperature 10.0 270 > th dose independent rect. 2 7
356 258.85 humidity 50.0 270 > th dose independent rect. 2 7
357 258.85 atmosphere 995.0 270 > th dose independent rect. 2 7
358 258.85 atmosphere 1015.0 270 < th dose independent rect. 2 7
359 258.85 temperature 10.0 270 > th dose independent rect. 9 17
362 259.01 precipitation 0.1 270 < th dose independent rect. 2 20
364 259.01 precipitation 0.1 270 < th dose dependent rect. 2 20
368 259.12 wind 7.0 10 < th dose independent rect. 22 7
370 259.12 temperature 10.0 10 > th dose independent rect. 22 7
371 259.12 temperature 30.0 10 < th dose independent rect. 22 7
372 259.12 humidity 50.0 10 > th dose independent rect. 22 7
375 259.12 atmosphere 995.0 10 > th dose independent rect. 22 7
376 259.12 radiation 1.0 10 < th dose independent rect. 22 7
381 259.12 temperature 10.0 10 > th dose independent rect. 5 17
383 259.12 atmosphere 1015.0 10 < th dose independent rect. 5 17
387 259.27 atmosphere 995.0 270 > th dose independent rect. 7 9
401 259.39 atmosphere 995.0 270 > th dose independent rect. 17 14
417 259.82 radiation 40.0 270 < th dose independent rect. 13 9
434 260.34 precipitation 0.1 270 < th dose independent rect. 2 7
435 260.34 precipitation 0.1 270 < th dose dependent rect. 2 7
439 260.44 temperature 10.0 270 > th dose dependent rect. 4 2
443 260.59 radiation 10.0 270 < th dose dependent rect. 3 18
445 260.67 precipitation 0.1 270 < th dose independent rect. 22 15
446 260.67 precipitation 0.1 270 < th dose dependent rect. 22 15
453 260.79 wind 9.0 270 < th dose independent rect. 22 15
454 260.80 precipitation 0.1 10 < th dose independent rect. 22 7
455 260.80 precipitation 0.1 10 < th dose independent rect. 5 17
457 260.80 precipitation 0.1 10 < th dose dependent rect. 22 7
458 260.80 precipitation 0.1 10 < th dose dependent rect. 5 17
459 260.81 wind 9.0 90 < th dose independent rect. 11 17
480 261.22 humidity 50.0 90 > th dose dependent rect. 4 19
481 261.23 radiation 1.0 270 > th dose independent rect. 7 9
483 261.28 temperature 10.0 270 > th dose dependent rect. 3 4
530 261.60 precipitation 0.1 90 < th dose independent rect. 11 17
533 261.60 precipitation 0.1 90 < th dose dependent rect. 11 17
578 261.75 radiation 1.0 10 < th dose dependent sin 8 NA
612 262.03 radiation 40.0 1440 < th dose dependent rect. 23 6
613 262.04 temperature 10.0 270 > th dose independent rect. 13 9
614 262.04 temperature 10.0 270 > th dose independent rect. 22 15
615 262.04 atmosphere 995.0 270 > th dose independent rect. 22 15
648 262.42 radiation 40.0 270 < th dose independent rect. 2 20
650 262.47 temperature 10.0 90 > th dose independent rect. 4 7
651 262.47 atmosphere 995.0 90 > th dose independent rect. 4 7
652 262.47 atmosphere 1015.0 90 < th dose independent rect. 4 7
653 262.47 temperature 10.0 90 > th dose independent rect. 11 17
659 262.68 precipitation 0.1 90 < th dose independent rect. 4 7
660 262.68 precipitation 0.1 90 < th dose dependent rect. 4 7
662 262.76 atmosphere 995.0 270 > th dose dependent rect. 3 4
677 263.00 radiation 20.0 90 < th dose independent rect. 4 19
681 263.08 wind 9.0 90 < th dose independent rect. 4 7
686 263.13 atmosphere 995.0 270 > th dose independent rect. 7 20
704 263.40 atmosphere 1015.0 10 < th dose independent rect. 22 7
706 263.50 wind 1.0 270 > th dose independent rect. 7 9
708 263.52 temperature 30.0 10 < th dose independent rect. 5 6
723 263.79 wind 9.0 10 < th dose independent rect. 5 17
750 263.97 temperature 10.0 90 > th dose dependent rect. 9 19
759 264.15 precipitation 0.1 270 < th dose independent rect. 17 14
760 264.15 precipitation 0.1 270 < th dose dependent rect. 17 14
783 264.35 humidity 50.0 90 > th dose independent rect. 4 7
842 264.94 wind 9.0 270 < th dose independent rect. 13 9
863 265.28 humidity 50.0 10 > th dose dependent rect. 22 7
867 265.38 radiation 1.0 270 < th dose independent rect. 3 17
892 265.67 atmosphere 995.0 10 > th dose independent rect. 5 17
893 265.73 precipitation 0.1 270 < th dose independent rect. 1 22
894 265.73 precipitation 0.1 270 < th dose dependent rect. 1 22
919 265.87 humidity 50.0 270 > th dose independent rect. 22 15
926 266.01 wind 1.0 270 > th dose independent rect. 9 17
955 266.37 atmosphere 995.0 270 > th dose independent rect. 2 20
966 266.55 atmosphere 995.0 270 > th dose dependent rect. 23 2
978 266.82 wind 5.0 10 < th dose independent rect. 5 6
980 266.83 humidity 70.0 10 > th dose independent rect. 5 5